| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3269 |
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| Symbol | |
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| ID | 4312128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008391 |
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| Strand | + |
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| Start bp | 55728 |
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| End bp | 56750 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638151111 |
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| Product | porin |
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| Protein accession | YP_775158 |
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| Protein GI | 115358020 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00595502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.572597 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGGGT ATACGTATGC GCAATCGAGC GTGACGCTGT TCGGAACGGT CGGGGGCGGC
GTGCGTTGGA CCGACGGGGT ACAAGGCGGG CACCAGATCG GGTTCGACAG CAATTCCATT
TCGGGCAACT CGTTCGGCAT CCGCGGGGTG GAAGACCTGG GCGCGGGGTG GCGTGCGATC
TTCATGTTGC AGAGTGGCTT CATCACTGGC ACGGGCGGCA CGAAAGCGTC GAGTACGTTT
TTTTCTCAGC GCGCGTATGT CGGGCTGGAA GGTGGATTCG GCCGGCTCAT GCTGGGGCGT
CAGCTCAACG CAGCGGAAGA CATTGGGGTT CAGCTCGACC CGATTGAGGC CAACGGACCT
TCGCTGGCCA CCGTGCCGGG CATTGTGTGG GGCGGCAACT TTTTCACGCT GGACGCGCGC
TTCAACAATA CGATCAAGTA CGTCGGGCGC AGCGGCGGCT TCACGTTGCG GGCGAGCTAT
TCGCCGGGTG GCGTGGCCGG CAATACGCGG GCCGGGACCA ACTTCGCGGT CGGCACCAGC
TATCAGTTTC GGACGCTGCT GCTGGCCGCC GCGTATCAGA AGACCTACAA CGCCAGCGCC
TCGCAACATG CGGAGACGGC GATGGGCGGG GCAACGTGGC AGCTCGGGCC GACCCGGATG
TATTTGAGTT ACAGCGCACT GAAGGTTTCC GCGGCGACCG CGGCCGGCGC GGAACGGCGC
GATCATGTTC CGTCGATCGG GCTCGTCTAT CGGGTAACGC CCACGCTGCA GTTCACTGGG
GCGACCTATT ACGACATCGC CACCAACCTG AAAAATGTCG CGGGCGCCGA CGGCCGAAAA
ATGACGACGT ATGCGATGGT CGAATATTTT CTGTCGAAGC GCTCAGAACT CTATGTTGAA
TTCGACCGAA ACGGGTTTTC CGGTGCTTAC AAGAAAGATC CCACGAACGT GTCGGCATTG
AATCTTCGTC CGGACGGGCG CGCGGTGACC GGTGTTTCGA TCGGGATGAT CACGCAATTC
TAG
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| Protein sequence | MSGYTYAQSS VTLFGTVGGG VRWTDGVQGG HQIGFDSNSI SGNSFGIRGV EDLGAGWRAI
FMLQSGFITG TGGTKASSTF FSQRAYVGLE GGFGRLMLGR QLNAAEDIGV QLDPIEANGP
SLATVPGIVW GGNFFTLDAR FNNTIKYVGR SGGFTLRASY SPGGVAGNTR AGTNFAVGTS
YQFRTLLLAA AYQKTYNASA SQHAETAMGG ATWQLGPTRM YLSYSALKVS AATAAGAERR
DHVPSIGLVY RVTPTLQFTG ATYYDIATNL KNVAGADGRK MTTYAMVEYF LSKRSELYVE
FDRNGFSGAY KKDPTNVSAL NLRPDGRAVT GVSIGMITQF
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