Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3257 |
Symbol | |
ID | 4312223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 39599 |
End bp | 42016 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638151098 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_775146 |
Protein GI | 115358008 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0133032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0284743 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA CGACAGGCGG AAAGAAAGCA ACGGGCAAGG GCTCGACGGA GCCGACCACG AAGGTCACTG CGGCCAAGTC TGCTTCTTCC GCCAGGACAA CGTCTTCGGC CACGTCAGCC CCTGGGGGAA AGAAAACCGC GGCCGGCACT GCTCAGGCTG CGCCGGCGTC GGCAGCCAGA ACACGGGCTG CCGCCAGACC CGACTCCGGG CCGGCCAAGC CGGCGGCGAA GCGGGCAAGT GCGAAAAGCG CAAGGGACAC GACTGCCGCC GCGGACGAAA CGGCAGTACG TACTACTCAT GCACCCACGG TTCAACCGGC TGTCGTCCAG CAGCCGCGAG TCGATATAGC CGGTACGGCG AACTCCATGA CCAAAAAGCT GAACGAAGTA TCCGTCGATG ACGACGCAAA TCAGAGCGAC GAGCAGCCCG CACCCGCGGC TGCTCCGGGC AAATCCAAGG TGCGCGATCG TCGCGCCAAG GAAAAGGCGC TGCTGAAGGA AGCGTTCGCG ACGAGCACGC CCGGCACGGC CGAGGAGCTC GAAGAGCGCC GCGTGAAGCT GCGCGCGCTG ATCAAGCTCG GCAAGGAGCG CGGCTTCCTC ACGTATGCCG AAATCAACGA CCACCTGCCG GACAACTTCA CCGAGACAGA AGCCCTCGAG GGCATCATCG GTACGTTCAA CGACATGGGC GTGGCCGTAT ACGAGCAGGC ACCGGACGCG GAAACGCTGC TCCTGAACGA CAACGCGCCG GCCGCGTCGT CGGACGATGA AGTCGAGGAA GAAGCGGAAG TCGCGCTGTC GACCGTCGAT TCGGAATTCG GTCGCACGAC CGATCCGGTC CGGATGTACA TGCGCGAGAT GGGCACGGTC GAGCTGCTCA CGCGCGAAGG CGAAATCGAG ATCGCGAAGC GGATCGAGGA CGGCCTGCGC CACATGGTGA TGGCAATTTC CGCGTGCCCG ACGACGATCG CCGACATCCT CGCGATGGCC GAGCGCGTCG CGAACGAAGA GATCCGCGTC GACGAACTCG TCGACGGCCT GCTCGATCCG AATGCTTCGG ACTCCGCCGA TACGGACGGT TTCTCCGCGA AGGAAGCCGA AGCGATCGAG AACGAGGACG AGGAAGCCGA AGAGGAAGAG GAAGAAGAGG AAGAGGAGGA GGACGACGGT GCCGCACAGG CGTCGGCCAA CGCCGCCCAG CTCGAAGCCC TCAAGCGTGC ATCGCTCGAA AAGTTCTCGC AGATCAGCGA GTGGTTCGAC AAGATGCGCC GCGCGTTCGA GAAGGAAGGC TACAAGTCGA AGGCCTACCT GAAGGCGCAG GAAACGATCC AGACCGAGCT GATGACGATC CGCTTCACCG CGCGTACCGT CGAGCGTCTG TGCGACACGT TGCGTGCGCA AGTGGATGAA GTGCGTCAGG TCGAACGTCA GATCCTGCAC ATCGTCGTCG ACAAGTGCGG CATGCCGCGT TCGGAATTCA TCGCGCGCTT CCCGGGCAGC GAGACGGATC TCGACTGGGC CGAGAAGATC ACGGCCGAAG GCCATTCGTA CAGCGCGGTC CTGGCGCGCA ACATCCCGGC GATCCGCGAA CAGCAGCAGC GCCTGCTCGA CCTGCAGGCG CGCGTCGTGC TGCCGCTGAA GGACCTGAAG GAAACCAACC GCCAGATGGC GGCCGGCGAA CTGAAGGCGC GTCAGGCGAA GCGTGAAATG ACCGAGGCGA ACCTGCGTCT CGTGATCTCG ATCGCGAAGA AGTACACGAA CCGCGGCCTG CAGTTCCTCG ACCTGATCCA GGAAGGCAAC ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGTC GCGGCTACAA GTTCTCGACC TATGCGACGT GGTGGATCCG TCAGGCCATC ACGCGTTCGA TCGCGGACCA GGCGCGCACG ATCCGTATTC CGGTTCACAT GATCGAGACG ATCAACAAGA TGAACCGCAT CTCGCGGCAG ATCCTGCAGG AAACCGGTCT CGAGCCGGAT CCGGCAACGC TCGCCGAGAA GATGGAGATG CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCGAAGG AGCCGATCTC GATGGAAACG CCGATCGGTG ACGACGACGA TTCCCATCTC GGCGACTTCA TCGAGGACAA CAACACGGTC GCGCCGGCGG ATGCCGCGCT GCATGCAAGC ATGCGCGACG TCGTGAAGGA CGTGCTCGAT TCGCTGACGC CGCGTGAGGC GAAGGTGCTG CGGATGCGCT TCGGTATCGA GATGAGCACC GATCACACGC TCGAGGAAGT CGGCAAGCAG TTCGACGTCA CGCGTGAGCG GATCCGTCAG ATCGAGGCCA AGGCGCTGCG CAAGCTGCGT CATCCGAGCC GTTCCGACAA GCTGAAGTCG TTCCTCGAAG GGAACTGA
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Protein sequence | MAKTTGGKKA TGKGSTEPTT KVTAAKSASS ARTTSSATSA PGGKKTAAGT AQAAPASAAR TRAAARPDSG PAKPAAKRAS AKSARDTTAA ADETAVRTTH APTVQPAVVQ QPRVDIAGTA NSMTKKLNEV SVDDDANQSD EQPAPAAAPG KSKVRDRRAK EKALLKEAFA TSTPGTAEEL EERRVKLRAL IKLGKERGFL TYAEINDHLP DNFTETEALE GIIGTFNDMG VAVYEQAPDA ETLLLNDNAP AASSDDEVEE EAEVALSTVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE IAKRIEDGLR HMVMAISACP TTIADILAMA ERVANEEIRV DELVDGLLDP NASDSADTDG FSAKEAEAIE NEDEEAEEEE EEEEEEEDDG AAQASANAAQ LEALKRASLE KFSQISEWFD KMRRAFEKEG YKSKAYLKAQ ETIQTELMTI RFTARTVERL CDTLRAQVDE VRQVERQILH IVVDKCGMPR SEFIARFPGS ETDLDWAEKI TAEGHSYSAV LARNIPAIRE QQQRLLDLQA RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDNNTV APADAALHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ IEAKALRKLR HPSRSDKLKS FLEGN
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