| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3224 |
|---|
| Symbol | |
|---|
| ID | 4312279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008391 |
|---|
| Strand | + |
|---|
| Start bp | 4722 |
|---|
| End bp | 6353 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638151066 |
|---|
| Product | CHAD domain-containing protein |
|---|
| Protein accession | YP_775114 |
|---|
| Protein GI | 115357976 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5607] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.870924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGTG TGCTGGAAAT CGTGTTGTGG CTGTCGCTGG ATGCCTGGCA AGTCAAGTCG
GGAAGCCGGG CACGTGGCGA GCCGCGCGAT TTCGGCGCCG AACTCGTCCG TGCTTGGCGC
ATTTGTCCGC AGGTGCGGAT GCGGCGCGGC CACGAGCGCG TGACGATCGA GCCGTGTCAG
GTCGAGGAGG CCGAGCCGAG CCCCGGCGAG TGCTGGTGGA CGTGGATCGA GTCGAACGCG
CAGGGGCGGC GTGTCGTCGC ATCCCGCACG AAGGCATTTG CGCCCGGCGT CATGGCGCGC
GAGCGGTTCG ACGCCGAGCA TGCCGGCATT GCCGTGGCCA CGCCGCTGTC CGCGCCGGCG
CCGCCCGCCG ATGCGCAATC GGCGCAGGCC ACGGGCGAGG CTATGACGCC CGGCCCGGTT
GACGAAGCGG CCGTCGCCGC CTCGTCCGGG CCGGCGCCGT TGCGGCTCGT CGCCGAGCGG
AGGCGCGGGC GATGGGCGGA CGACAGCGGC GTGGTGGTCG AGATGACGCT CGACGACCTC
ACGCTGCACG GCGGCGCCGA CCTGCCGAGG CGCCACGTCG AGTTGCGCCT GGCGGCGCCC
GACTGGGAAA CCGTCCCCGC CCGCACGGCC GCGCTGCGCG CGCTGTTCGC CGCCGCGCGC
GAGCTCAGCG GCGCATGGCC CGCGTTCGTG CAGCTGACCA GCGTGATCGA TCGCGCATGT
GCGGGCGAGC CGGGCGTCAC CGGGCCGGTC AAGGCGAAAC TCGTCGACCT GACCGGCATC
CGCACGCAGC GAACCGCGCT GTTCGCGCTG TCCGGCGACA TCGCCGCGCA ATGGCTCGGC
AACGAGGGCG GCGTGCTCGA TCGCGACGAT CCCGAATTCG TGCACCAGAT GCGCGTCGCG
CTGCGCCGGC TGCGCACGCT GATGCGCTTC TTTCCGCGCT TCGCGGACGA TCAGTGGCAG
GAAACCTTCG GTGTCGACCT GCGCTGGCTC GCGTCGCTCC TCGGCACGGT GCGCGACTGG
GACGTGTTTT CGACCGAAAG CCTGCCCGCG CTGATCGCGG CCGATGGCGG CAGCGCCGAC
TGGAACGGCA CGCTCGACGC CGCGCGTGCG CAGGCGACGG CGGCGCGCAT CGAACTGCGC
CAGGCGCTGC ATTCGGCACG CTATGCGCGG CTGACGCTCG GCTGGCTCGA ATGGCTGAGC
ACGCTCGCGC TGCCGCCGGC CGCCAGCGAC GACGACGCGC CGTCGCTGCG ACGACACGCG
ACCAAGCGCG TGCGGCGGCT GTTCGGTCAT CTGTATGCAT CGCCGTCGCT CACGTCGCTC
GATACGGCCG CGCGGCACCA GGTGCGGATC GACACGAAGC GGCTGCGCTA TGCGCTCGAA
TTCTTCGCGT CGCTCGCGTC GCGCCGCACG CGCAACGAAA CGGTCAAGAC GCTCGCGCGC
GTGCAGAGCG TGCTCGGCGA AGCGAACGAC ACGATGGTCG CGCAGCATCA TCTCGAACAA
CTGGCGGCAC CCGCGTATCA GCTCGGTTTC GTGCGCGGCT ATGGTGCCGC GCTCGAGCAA
CGCGCGGCGC GCGACGCCGA GGCGCTGCTC GCGAGCCTGC GCCCGCCGCG ACTCGACGGC
AAGCCGCGGT GA
|
|---|
| Protein sequence | MSRVLEIVLW LSLDAWQVKS GSRARGEPRD FGAELVRAWR ICPQVRMRRG HERVTIEPCQ
VEEAEPSPGE CWWTWIESNA QGRRVVASRT KAFAPGVMAR ERFDAEHAGI AVATPLSAPA
PPADAQSAQA TGEAMTPGPV DEAAVAASSG PAPLRLVAER RRGRWADDSG VVVEMTLDDL
TLHGGADLPR RHVELRLAAP DWETVPARTA ALRALFAAAR ELSGAWPAFV QLTSVIDRAC
AGEPGVTGPV KAKLVDLTGI RTQRTALFAL SGDIAAQWLG NEGGVLDRDD PEFVHQMRVA
LRRLRTLMRF FPRFADDQWQ ETFGVDLRWL ASLLGTVRDW DVFSTESLPA LIAADGGSAD
WNGTLDAARA QATAARIELR QALHSARYAR LTLGWLEWLS TLALPPAASD DDAPSLRRHA
TKRVRRLFGH LYASPSLTSL DTAARHQVRI DTKRLRYALE FFASLASRRT RNETVKTLAR
VQSVLGEAND TMVAQHHLEQ LAAPAYQLGF VRGYGAALEQ RAARDAEALL ASLRPPRLDG
KPR
|
|---|
| |