| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3186 |
|---|
| Symbol | |
|---|
| ID | 4310462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 3522856 |
|---|
| End bp | 3523905 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638151027 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_775076 |
|---|
| Protein GI | 115353237 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.651713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCATT TGCAGTCGAT GCGCGTGTTC GTCAAGGTTG CGGATCTCGG CAGTTTCGCG
CGGGCCGCGA GTGCTATGGA TATCTCCAAC GCGGTCGCGA CGCGTCACGT CGCCGATCTG
GAGGGCCGCC TCGGCACACG GTTGCTGAAC CGCACCACCC GCAGCCTTTC GCTGACGGAG
TCGGGCCAGG TCTATCTGGA GCGGGCGCGC CAGATTCTCG ATGAGCTCGA GGATGTCGAA
CAGATGGTCG TCGCGCGCAA TCACGAGCCG GTCGGCACGT TGCGCATCGT CGCGCCGGTC
GTGTTCGGCC TGCATAACCT CGCCCCCGTC CTGCAGTCGT ACACGGAGAA TTTCCCGAAA
GTCGTGCCGG ATCTGACGCT GGTCGACCGC CAGGTCGATC TCGTCGAGGA AGGTTTCGAC
GTCGGCATCG TCGTCACGCG CCAGATGCGC AGCGCGAGCA TCGTCACGCG GCGCCTGACC
ACGGGCTGCA TGACCGTGTG CGCGACGCCG AGCTATCTGG AAAAGCATGG CGTGCCGACT
CATCCGGAAC AACTCGCCGA GCACCCGGCG CTGAGCCTGC CGACCGAATA CTGGGGCGAC
GAGCGTGTGT TCACGGGGCC CGATGGCGAA GTGCGCGTGC GCCCGACCAA CGTGATCGTC
GCGAACAACA CCGCGATGCT GCGCCAGTTC GCGCTGCTCG GGATGGGCGT CGCGATCCTG
CCGAGCTACC TGATCGGCGG CGACATCGCA CGCGGCGCGC TGGTGCGGTT GCTGCCGGAT
TTCCGGCTGC CGCAGGTCGA GATCAACATT GCATACCCGA GCCGGCGCCA TCTGCCCGCG
AAGGTGCGCA CGTTCATCGA CCACCTCGTC GAATATTTCA GCCACGCGAC CGACGCGGTG
ATTGGCGAAC AATGGGCCGC ACAGAGTGCG ATGCCGGCGC CGATCGGCGT CGAGATGCGT
GCCGAGCAGC CCGAATCGAC CGACCCGAAC CTGCAGCCGC GCGTCGCGCG CTCGGCGCGC
CCGCGCGTCG CGGTGCCGTC GCCGCTGTAA
|
|---|
| Protein sequence | MDHLQSMRVF VKVADLGSFA RAASAMDISN AVATRHVADL EGRLGTRLLN RTTRSLSLTE
SGQVYLERAR QILDELEDVE QMVVARNHEP VGTLRIVAPV VFGLHNLAPV LQSYTENFPK
VVPDLTLVDR QVDLVEEGFD VGIVVTRQMR SASIVTRRLT TGCMTVCATP SYLEKHGVPT
HPEQLAEHPA LSLPTEYWGD ERVFTGPDGE VRVRPTNVIV ANNTAMLRQF ALLGMGVAIL
PSYLIGGDIA RGALVRLLPD FRLPQVEINI AYPSRRHLPA KVRTFIDHLV EYFSHATDAV
IGEQWAAQSA MPAPIGVEMR AEQPESTDPN LQPRVARSAR PRVAVPSPL
|
|---|
| |