Gene Bamb_3090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3090 
Symbol 
ID4310782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp3410565 
End bp3412193 
Gene Length1629 bp 
Protein Length542 aa 
Translation table11 
GC content63% 
IMG OID638150930 
Productextracellular solute-binding protein 
Protein accessionYP_774980 
Protein GI115353141 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATACA ACCGTCTGTT GCACACCCTG CGTGTTACCG CCATTGCAGG CGTGGCAGCG 
GCATCGCTCG GCGTCGCGGG TTCTGCATTC GCACAGATCC CGAACAAAAC GCTCGTCTAC
TGCTCAGAAG GCAGCCCGGC GGGTTTTGAT TCCGCGCAAT TCACGACCGG CGTCGATTTC
ACGGCCGCCA CGTTCACCGT CTACAACCGA CTCGTCGAAT TCGAGCGCGG CGGCACGAAG
GTCGAGCCGG GCCTCGCGGA GAAGTGGGAC GTCTCGTCCG ACGGCAAGGT GTACACGTTC
CACCTGCGTC ATGGCGTGAA GTTCCACACG ACCGACTTCT TCAAGCCGAC GCGCGAATTC
AACGCGGACG ACGTCGTGTT CTCGTTCGAG CGCATGCTCG ATCCGAACCA GGCGTTCCGC
AAGGCCTACC CGGTGTCGTT CCCGTACTTC ACCGACATGG GCCTCGACAA GCTGATCACG
AAGATCGAGA AGGTCGATCC GTACACTGTG AAGTTCACGC TGGCCGAACC GAACGCGCCG
TTCATCCAGA ACATGGCGAT GGAATTCGCG TCGATCCTGT CGGCCGAATA CGGCGAGCAG
CTGATGAAGG CCGGCAAGGC CGCCGACATC AACCAGAAGC CGGTCGGCAC GGGCCCGTTC
ATCTTCCGCA GCTACACGAA GGACGCGACG ATCCGTTTCG ACGGGAATCC TGACTATTGG
AAGAAGGGTG CCGTGAAGCT GTCGAAGCTG ATCTTCTCGA TCACGCCCGA CCCGGGCGTG
CGCGTGCAGA AGATCAAGCG CAATGAATGC CAGGTGATGA GCTATCCGCG TCCGGCCGAC
ATCGCGACGC TGAAGGCCGA CTCGGGCATC GACATGCCGT CGCAGCCGGG CTTCAACCTC
GGCTACCTCG CGTACAACGT CGAGCACAAG CCGGTCGACA AGCTCGAGGT GCGTCAGGCG
CTCGACATGG CGATCAACAA GAAGGCGATC CTCGAATCCG TCTATCAGGG CGCGGGCCAG
GCCGCCACCG CGCCGGTGCC ACCGACCCAA TGGTCGTACG ACAAGAACCT GAAGATGCCC
GCGTACGACA CCGCGAAGGC GAAGGCGCTG CTCGCGAAGG CCGGCTTCCC GAACGGTTTC
GACATCACGC TGTGGGCCAT GCCGGTGCAG CGCGCGTACA ACCCGAACGC CCGCCTGATG
GCCGAGATGA TCCAGGCCGA CTGGGCGAAG ATCGGCGTGA AGGCGAAGAT CGTCACGTAC
GAGTGGGGCG AGTACATCAA GCGCGCGCAC TCGGGCGAGC AGGACACGAT GCTGATCGGC
TGGACGGGCG ACAACGGCGA CCCGGACAAC TGGCTCGGCA CGCTGCTCGG CTGCGAGGCG
ATCAAGGGCA ACAACTTCTC GCACTGGTGC TACAAGCCGT TCGACGAGCT GGTCCAGAAG
GGCCGCACGA CGACGGGCCA GGACGCGCGC ACGAAGATCT ACACGCAGGC TCAGCAGATC
TTCGCGCAGC AGCTGCCGTT CTCGCCGATC GCGAACTCGA CGGTCTATCA GCCGGTACGC
AAGAACGTGG TCGACATGCG CATCGAGCCG CTCGGCTATG CCCGCTTCGA CGGTGTCGGC
GTGAAGTAA
 
Protein sequence
MEYNRLLHTL RVTAIAGVAA ASLGVAGSAF AQIPNKTLVY CSEGSPAGFD SAQFTTGVDF 
TAATFTVYNR LVEFERGGTK VEPGLAEKWD VSSDGKVYTF HLRHGVKFHT TDFFKPTREF
NADDVVFSFE RMLDPNQAFR KAYPVSFPYF TDMGLDKLIT KIEKVDPYTV KFTLAEPNAP
FIQNMAMEFA SILSAEYGEQ LMKAGKAADI NQKPVGTGPF IFRSYTKDAT IRFDGNPDYW
KKGAVKLSKL IFSITPDPGV RVQKIKRNEC QVMSYPRPAD IATLKADSGI DMPSQPGFNL
GYLAYNVEHK PVDKLEVRQA LDMAINKKAI LESVYQGAGQ AATAPVPPTQ WSYDKNLKMP
AYDTAKAKAL LAKAGFPNGF DITLWAMPVQ RAYNPNARLM AEMIQADWAK IGVKAKIVTY
EWGEYIKRAH SGEQDTMLIG WTGDNGDPDN WLGTLLGCEA IKGNNFSHWC YKPFDELVQK
GRTTTGQDAR TKIYTQAQQI FAQQLPFSPI ANSTVYQPVR KNVVDMRIEP LGYARFDGVG
VK