Gene Bamb_3078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_3078 
Symbol 
ID4310770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp3397734 
End bp3398693 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content71% 
IMG OID638150918 
ProductNAD-dependent epimerase/dehydratase 
Protein accessionYP_774968 
Protein GI115353129 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0702] Predicted nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCGCC AGACCGTCGC GCTGCTGGGC GGCACCGGCT TCATCGGCAG CCGGCTCGTC 
AATGCGCTGA TCGACGCCGG CAAGCATGTG AGGATTGGCA CGCGGCGGCG CGACCACGCG
CGCCACCTGC AGATGCTGCC GGTCGAGATC GTCGAGCTCG ATGCGCTCGA CACGCGCACG
CTGGCCCGGT TCGTCGCCGG CGCGCACGCA GCCATCAATC TCGTCGGCGT GCTGCACGAC
GGCCGCGGCA CGCCATACGG GCCCGGCTTC GAGCGCGCGC ACGTCGCGCT GCCGGCCGCG
CTGGCCGCCG CATGCGTCGA AGTCGGCGTG CAGCGCGTGC TGCACATGAG CGCGCTCGGC
GCCGATTCGC ACGGCGCGAG CATGTACCAG CGCTCGAAAG GCGACGGCGA GGCCGCGCTG
CACGCGGTCG CGGCGACCGA TTCGCTCGCG CTGACGATCT TCCGCCCGTC GGTCGTGTTC
GGCCCCGGCG ACACATTCCT CAACACATTC GCGAACCTGC AGCGCACGCT GCCGGTGCTG
CCGCTCGCGA TGCCCGACGC GCGTTTCCAG CCGGTGTTCG TCGGTGACGT CGTAACCGCG
TTCGTCAACA CGCTCGATCT CACGGCCGCG CACGGCAAAA CCTACGAGCT CGGCGGTCCG
ACCGTCTATA CGCTCGAGCA GCTGGTGCGC TATTGCGGCA CGCTGGTCGG CCGGCAGGCA
CGCATCGTGC GGCTGTCCGA CGCGCTTGCG CAGCTGCAGG CGCGCGTGTT CGAATGCCTG
CCCGGCGAGC CGATGATCAC GCGCGACAAT CTCGCGTCGA TGTCGGTGCC CAACGTGCTG
TCAGGGCCGC TCGCGCCGGA ACTCGGGCTG TCGCCCGCGA GTCTCGAGAG CATCGCGCCC
GCGTATCTCG GTGACGGCGC GCAGCGCTCC CGCTTCGACT GGTTCCGCTC GCGCCGCTAG
 
Protein sequence
MDRQTVALLG GTGFIGSRLV NALIDAGKHV RIGTRRRDHA RHLQMLPVEI VELDALDTRT 
LARFVAGAHA AINLVGVLHD GRGTPYGPGF ERAHVALPAA LAAACVEVGV QRVLHMSALG
ADSHGASMYQ RSKGDGEAAL HAVAATDSLA LTIFRPSVVF GPGDTFLNTF ANLQRTLPVL
PLAMPDARFQ PVFVGDVVTA FVNTLDLTAA HGKTYELGGP TVYTLEQLVR YCGTLVGRQA
RIVRLSDALA QLQARVFECL PGEPMITRDN LASMSVPNVL SGPLAPELGL SPASLESIAP
AYLGDGAQRS RFDWFRSRR