| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3045 |
|---|
| Symbol | |
|---|
| ID | 4310527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 3362695 |
|---|
| End bp | 3363690 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638150885 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_774935 |
|---|
| Protein GI | 115353096 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAA CTTCCGCTTC CACTCCGTCC GCGCCGGTGT CGACCGGTGC AGTAAGCAGC
AGCCCCGGCG CCGGCCGCGC GCGCCGCAGC CGCTTCGCCG CGCTGTCGCG CTTCCTGCCG
TCGGGCCGCA ACGTCGCGAT CGGCGTGCCG TTCCTGTGGC TCACGATCTT CTTCGCACTG
CCGTTCGTGC TGGTGTTCAA GATCAGCTTC GCCGACCAGG TGATGGGGAT CCCGCCGTAC
ACGTCGCTCG TCCAATTCAA GGACGGCGTC GTGCACTTCG CGCTGCAGCT GTCGCACTAC
GCGTTCCTGC TGCAGGACGA CCTGTACATC GCGACCTACC TCAGCTCGCT GAAGATGGCC
ACCGTGTCGA CGGTGCTGTG CCTGCTGATC GGTTACCCGA TGGCGTACTA CATCGCCCGT
GCCGAACCGA GCCGGCGCAA CGTGCTGATG ATGGCCGTGA TGCTGCCGTT CTGGACGTCG
TTCCTGATCC GCGTGTACGC ATGGATCGGC ATCCTGAAGG ACGACGGCCT GCTGAATCAC
ACGCTGATCG CGCTGGGCAT CATCCACACG CCGCTGCGCC TTTATCACAG CGACGCGGGC
GTCTACATCG GGATGGTCTA TTCGTACCTG CCGTTCATGA TCATGCCGCT CTATGCGCAC
CTCGTGAAGA TGGATCTCAC GCTGCTCGAG GCCGCGTACG ACCTCGGGGC GAAGCCGTGG
GTCGCGTTCA CGCGCATCAC GCTGCCGCTG TCGAAGAACG GGATCATCGC CGGCAGCCTG
CTGGTGTTCA TTCCGGCCGT CGGCGAATAC GTGATCCCGG AACTGCTCGG CGGTGCCGAC
ACGCTGATGA TCGGCCGCGT GATGTGGGAT GAGTTCTTCA ACAACATGGA CTGGCCGATG
GCGTCCGCGG TGACGGTCGC GATGGTGCTG CTGTTGCTGG TGCCGATGGC GCTGTTCCAG
TACTACCAGG TCAAGGAACT GGAGGGAGCG AAATGA
|
|---|
| Protein sequence | MIRTSASTPS APVSTGAVSS SPGAGRARRS RFAALSRFLP SGRNVAIGVP FLWLTIFFAL
PFVLVFKISF ADQVMGIPPY TSLVQFKDGV VHFALQLSHY AFLLQDDLYI ATYLSSLKMA
TVSTVLCLLI GYPMAYYIAR AEPSRRNVLM MAVMLPFWTS FLIRVYAWIG ILKDDGLLNH
TLIALGIIHT PLRLYHSDAG VYIGMVYSYL PFMIMPLYAH LVKMDLTLLE AAYDLGAKPW
VAFTRITLPL SKNGIIAGSL LVFIPAVGEY VIPELLGGAD TLMIGRVMWD EFFNNMDWPM
ASAVTVAMVL LLLVPMALFQ YYQVKELEGA K
|
|---|
| |