| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_3006 |
|---|
| Symbol | |
|---|
| ID | 4310593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 3325824 |
|---|
| End bp | 3326765 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638150846 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_774896 |
|---|
| Protein GI | 115353057 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC TGTTCTACTC GCCGCACCAG GAAGCCGACG CATGGCGCGA CGCGATCGCG
CAGGCGCTGC CCGACGCCGA GCTGCGCGCA TGGCAGCCGG GCGACACGGC CGCCGCCGAC
TACGCGCTCG TGTGGCGCGC GCCGCGCGAG CTGTTCGCGC CGCGCGACGG CCTGCGCGCG
ATCTTCAATC TCGGCGCGGG CGTCGACGCG CTGCTCGCAC TCGAGCACGC GCATCCCGGC
ACGCTGCCGC GCGACGTGCC GCTGGTGCGC CTCGAGGATT CGGGCATGGC GCAGCAGATG
ATCGAATACG TGACGCACGC GGTGCTGCGC TACCTGCGCC GCTTCGACGA ATACGAAGCG
CTGCAGCGCG AGCGCCGCTG GCAGGTGCTC GAACCGCATC CGCGCGCGCG CTTCACCGTC
GCGGTGCTCG GCCTCGGCGT GCTCGGTGCG CAGGTCGCGC AGGCGCTCGC CGCGCTCGGC
CTGCCGGTGC GCGGCTACAG CCGCAGCCCG AAGCGGCTCG ACGGTATCGA CACCTTCGCG
GGCGACGACG CATTCGACGC GTGCATCGAC GGCGCGAAGG TGCTCGTGAA CCTGCTGCCG
AGCACACGCG ATACCGACGG GATCCTGTCG GCGCGCACCT TCGCCCGGCT CGCGCCGGGT
GCGTACCTGG TGAACGTCGC ACGCGGCGCG CATCTCGTCG AAGCCGACCT GCTCGACGCC
CTCGCAAGTG GCCAGCTCGC CGCGGCGACG CTCGACGTGT TCCAGCACGA GCCGCTACCG
GCCGATCATC CGTTCTGGCA CGCGCCGCGC ATCACGATCA CGCCGCACTG TTCGGCCGAG
ACGCTGCGCG ACGAAGCGGT CGAGCAGATC GCGGGCAAGA TCCGCGCGCT CGAGCGCGGC
GAGCGGGTCG GCGGCATCGT CGACTACGCG CGCGGCTACT GA
|
|---|
| Protein sequence | MKILFYSPHQ EADAWRDAIA QALPDAELRA WQPGDTAAAD YALVWRAPRE LFAPRDGLRA
IFNLGAGVDA LLALEHAHPG TLPRDVPLVR LEDSGMAQQM IEYVTHAVLR YLRRFDEYEA
LQRERRWQVL EPHPRARFTV AVLGLGVLGA QVAQALAALG LPVRGYSRSP KRLDGIDTFA
GDDAFDACID GAKVLVNLLP STRDTDGILS ARTFARLAPG AYLVNVARGA HLVEADLLDA
LASGQLAAAT LDVFQHEPLP ADHPFWHAPR ITITPHCSAE TLRDEAVEQI AGKIRALERG
ERVGGIVDYA RGY
|
|---|
| |