| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2971 |
|---|
| Symbol | |
|---|
| ID | 4310558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 3276344 |
|---|
| End bp | 3277117 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638150811 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_774861 |
|---|
| Protein GI | 115353022 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACTC CGCTGAAGGT CTTCATCACC GGCGCGTCGA GCGGCCTCGG CCTCGCGATG
GCCGAGGAAT ACGCCCGCCA GGGCGCCACG CTCGCCCTCG TCGCGCGCCG CACCGATGCC
CTCGATGCGT TCGCGCGACG CTTCCCCAAG CTGTCCGTCT CCGTCTACTC CGCCGACGTG
CGCGACGCCG ATGCGCTCGC GACGGCCGCC GCGTCGTTCA TCGCCGCGCA CGGCTGCCCC
GACGTCGTGA TCGCGAACGC GGGCATCAGC CAGGGCGCCG TCACGGGCCA GGGCGACCTC
GCCACGTTCC GCGACGTGAT GGACATCAAC TACTACGGGA TGGTCGCGAC GTTCGAGCCG
TTCGTCGGCC CGATGACGGC CGCGCGCCAC GGCACGCTGG TCGGCGTCGC GAGCGTCGCC
GGCGTGCGCG GCCTGCCGGG CTCCGGCGCA TACAGCGCGT CGAAGTCGGC CGCGATCAAG
TATCTCGAGG CGCTGCGCGT CGAGCTGCGG CCGGCCGGTG TCGGCGTCGT GACGATCGCT
CCCGGCTATA TCCGCACGCC GATGACCGCG CACAACCCGT ACCGGATGCC GTTCCTGATG
GACGCCGATC GCTTCGCGGC CCGCGCCGCG CAGGCGATCG CGCGGCAGCA CGCGTTCCGC
GTGATTCCGT GGCAGATGGG CGTCGTCGCG AAGGTGCTGC ACGTGTTGCC GCGCTGGCTC
TACGACCGCC TGTTCGAGAA GGCGCCGCGC AAGCCGAAGG CCGGCGCGCA CTGA
|
|---|
| Protein sequence | MTTPLKVFIT GASSGLGLAM AEEYARQGAT LALVARRTDA LDAFARRFPK LSVSVYSADV
RDADALATAA ASFIAAHGCP DVVIANAGIS QGAVTGQGDL ATFRDVMDIN YYGMVATFEP
FVGPMTAARH GTLVGVASVA GVRGLPGSGA YSASKSAAIK YLEALRVELR PAGVGVVTIA
PGYIRTPMTA HNPYRMPFLM DADRFAARAA QAIARQHAFR VIPWQMGVVA KVLHVLPRWL
YDRLFEKAPR KPKAGAH
|
|---|
| |