| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2817 |
|---|
| Symbol | |
|---|
| ID | 4310824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 3108578 |
|---|
| End bp | 3109480 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638150656 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_774707 |
|---|
| Protein GI | 115352868 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGC CGTCATCCGT TTCACCGCCG CAGCCCGGCG ATGCGCGCCG CTGGAAGCCA
ACGCCGCTGA TCGCGGGCAC CGCCGCGCTG CATGCGGGCG CGCTCGCGGC CGTCGTCGCG
CAGCCGGCCG CGTGGCCGTG GGCCGCCGGC GGCGTGGTCG CCTCGCATCT CGCGCTGACG
GCCGCCGGCC TGTGGCCGCG CAGCGCATTG CTCGGGCCGA ACTGGACGCG GCTGCCGGCC
GGTGCCGGCC GCCGGATCGC GCTGACGATC GACGACGGCC CGGACCCCGA CGTCACGCCG
CGCGTGCTCG ACCTGCTCGA TCGTTACGAT GCACGCGCGA CGTTCTTCTG CATCGGCGAT
CTCGCACGAC GCCATCCGCA ATGGATCGAA GCGATCATCG CGCGCGGCCA CGCGGTCGAG
AACCACAGCC AGCGGCACCG GCATACGTTC TCGCTGTCGG GGCCCGCCGC GCTGCGGCGC
GAAATCGCCG CCGCGCAGCA GACGCTGACC GAGATCTCCG GCATGCGACC GCGCTTCTTC
CGCGCGCCGG CCGGCCTGCG CAATCCGTTT CTCGAGCCGG TGCTCTGCGA GCTCGGGCTG
CAGCTCGCCA GCTGGACGCG CCGCGGCTTC GACACGCGCG AGCACGACGC GGACACCGTC
ACGCGCCGCC TGCTGAACGG CCTCGCGCCA CACGACATCC TGCTCGTGCA TGACGGCCAT
GCGGCGCGCG ATGCGCGCGG CGAACCGGTC GTGCTCGACG TGCTGCCGGC GTTGCTGCGC
GCGGCCGCCG ATGCGCGGTT GCAGTGGACC ACGCTGCGCG CCGCGCTTGC GCCCGAAGCG
CCCGAAGCGC CCGAAGCGCC CGGCCAGCCG GGCATGCTGG CACCCCCGTT TGATAAAATC
TGA
|
|---|
| Protein sequence | MNAPSSVSPP QPGDARRWKP TPLIAGTAAL HAGALAAVVA QPAAWPWAAG GVVASHLALT
AAGLWPRSAL LGPNWTRLPA GAGRRIALTI DDGPDPDVTP RVLDLLDRYD ARATFFCIGD
LARRHPQWIE AIIARGHAVE NHSQRHRHTF SLSGPAALRR EIAAAQQTLT EISGMRPRFF
RAPAGLRNPF LEPVLCELGL QLASWTRRGF DTREHDADTV TRRLLNGLAP HDILLVHDGH
AARDARGEPV VLDVLPALLR AAADARLQWT TLRAALAPEA PEAPEAPGQP GMLAPPFDKI
|
|---|
| |