| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2712 |
|---|
| Symbol | |
|---|
| ID | 4310408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2987964 |
|---|
| End bp | 2988851 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638150551 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_774602 |
|---|
| Protein GI | 115352763 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAC TCCTGCCAAT GCGGCTATTC ATCAAGGTAG CCGAACTTCA CAGTTTCGCG
CGTGCAGCCA CGGAACTGAA CATCTCCAAC TCGTCGGCCA CCCGCCTCAT CATGGGCATC
GAGGATCGGC TCGGCGCACG CCTGCTGAAC CGCACGACGC GCAGCCTGTC GCTCACCGAT
GCCGGTCATC TGTATCTCGC GCAGATCCGT CACGTGATCG AGGAAATCGA CCGCGTCGAG
GACACGATCG CGTCGATGCA TCACGAGCCG ATCGGATCGC TGAAGATCGC CGCGCCGGTC
ATGTTCGGCA TGCACGTGCT CGCCCCGGCG ATCGATGCGT TCAAGACGCA GCATCCGGCC
ATCGTGCCGG AAGTCACGAT CGTCGACCGC CATGTCGATC TCGTATCGGA GGGCTTCGAC
GTCGGGCTGC TGCTGTCGCA GCGCATCAGC ACCAACACGC TGGTGACGCG CCCGCTCACG
CGGCTCAAGC GGATCGTCTG CGCGGCGCCC CGGTATGTCG AAGCTCACGG TGCACCGATC
CATCCGCACG ATCTCGCGTC CCATTCGTGC CTGACGTTCC ATGCCGACTT CGCGGGCGAA
TACCTGTCGT TCGATCACGA GCCGACACGC GTCGCGGTGC GGCCGAACAA ATCCGCATCG
TCGAACAACA TCGGGCTGAT CCGGAACTGG GCGCTGTCGG GCATGGGCAT CGCGGTGCTG
CCCGACTTCC TAGTGGAAGC GGATCTCGCC GACGGACGGC TGCTCGCGCT GCTGCCCGAC
TATCGGCTCG AGGAGCTCGA GATGAATATC GCGTACCCGA GCCGACGGCA CTTTCCGCGC
AAGACGCGGC TTTTCGTCGA TCACCTGGTC GAGTATTTCG TCAGGTGA
|
|---|
| Protein sequence | MDELLPMRLF IKVAELHSFA RAATELNISN SSATRLIMGI EDRLGARLLN RTTRSLSLTD
AGHLYLAQIR HVIEEIDRVE DTIASMHHEP IGSLKIAAPV MFGMHVLAPA IDAFKTQHPA
IVPEVTIVDR HVDLVSEGFD VGLLLSQRIS TNTLVTRPLT RLKRIVCAAP RYVEAHGAPI
HPHDLASHSC LTFHADFAGE YLSFDHEPTR VAVRPNKSAS SNNIGLIRNW ALSGMGIAVL
PDFLVEADLA DGRLLALLPD YRLEELEMNI AYPSRRHFPR KTRLFVDHLV EYFVR
|
|---|
| |