Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_2708 |
Symbol | |
ID | 4310404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2982395 |
End bp | 2983597 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638150547 |
Product | porin |
Protein accession | YP_774598 |
Protein GI | 115352759 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGA AGCTGTTGGC CGGCGCGGGT GTCGCGCTGA TCGCGGGTGC GGCGCACGCC CAGAGCAGCG TCACGCTGTA CGGGATTATC GATGAAGGGC TGACCTATGC GAGCAACATC GCGACGCCCG GCCCGCACGG CGCGGTGAGC GGCAAGCCCG CGTTGCGAAT GCTCGGCGGC GTGCAGCAGG CGAGCCGTTG GGGGCTGCGC GGCAGCGAGG ATCTCGGCGG GGGGCTGGCC GCGGTCTTCA CGCTCGAGAA CGGTTTCGAT CCGAGCACCG GCAGGCTCGG GCAGGGCGGG CTGATGTTCG GCAAGAAGGC GTTCGTCGGG CTGTCGGGGC CGTTCGGCAC CGTCACGCTC GGGCGGCAGT ACGACACCAA CGTCGACATC CTCGGGCCGC TCGAGGCCGC CGCGCTGTTC GGCGGCTACA TGGTCGCGCA TCCCGGCGAC CTCGACAACG TGAACAACGC GAACTCGACC AACAACGCGA TCAAGTTCAC CAGTAAAGAC TACGGCGGGG CTCGCGTCGC GGCGATGTAT GGGGTGGGCG GCGTCGCCGG CGCGGCGACG CGCAATCAGG TGTGGTCGGC AACAGTTGCC TACACGCGCG GGCCGCTTGC GGTGGCGGCC GGCTATCTGA ATGCGCGCAA TCCGAACGTG TCGTTCTTCG GCACGACCGG CAGCCCCGCG CCGAGCGTCG GCGGCGTGCC GGGCAGCAAC ATGCTGTCGC CGGTGTATTC CGGCTATGCA TCCGCGCGCA CGCTGCAGGT CGCGGTGGTG GGCGGCACCT ATGCGATCGG CGCGATGACG CTTGGCGCGA TGTATACGAA CACGTCGTTC CGTCAGCTCG GCGACCTGTC GTCCGGGCCG AACCCGGGCG GCGTGTCCGG CAACGCGGTG TTCAACAACG CGGAGGCGAG CGTGCGCTAC CAGTTCATGA CCTCGCTGTT CGGCGGCGTG GCGTACGACT ACACGCGCGG CGGCGGCGTG AACGGCCGCG ACGGCGCGAC GTATCACCAG GTCGCGGCGG GGCTCGACTA TTTCCTGTCG AAGCGCACCG ACGTCTACGT GAGCGCCGTC TATCAGCGCG CATCGGGCAC CGACTCGACG GGGCATCTGG CCGTCGCGGC GATCAACGGG CCCGGTGCAT CCGCGAACGA TCGGCAGCTG CAGGCGCGCG TCGGCATGCG GCACAAGTTC TGA
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Protein sequence | MKKKLLAGAG VALIAGAAHA QSSVTLYGII DEGLTYASNI ATPGPHGAVS GKPALRMLGG VQQASRWGLR GSEDLGGGLA AVFTLENGFD PSTGRLGQGG LMFGKKAFVG LSGPFGTVTL GRQYDTNVDI LGPLEAAALF GGYMVAHPGD LDNVNNANST NNAIKFTSKD YGGARVAAMY GVGGVAGAAT RNQVWSATVA YTRGPLAVAA GYLNARNPNV SFFGTTGSPA PSVGGVPGSN MLSPVYSGYA SARTLQVAVV GGTYAIGAMT LGAMYTNTSF RQLGDLSSGP NPGGVSGNAV FNNAEASVRY QFMTSLFGGV AYDYTRGGGV NGRDGATYHQ VAAGLDYFLS KRTDVYVSAV YQRASGTDST GHLAVAAING PGASANDRQL QARVGMRHKF
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