| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2678 |
|---|
| Symbol | |
|---|
| ID | 4310024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2950167 |
|---|
| End bp | 2951090 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638150516 |
|---|
| Product | branched-chain amino acid aminotransferase |
|---|
| Protein accession | YP_774568 |
|---|
| Protein GI | 115352729 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.492888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATGG CCGACCGCGA CGGCAAGATC TGGATGGACG GCAAGCTGAT CGACTGGCGC
GATGCCACGA TTCACGTCCT GACCCATACG CTGCACTACG GCATGGGCGT CTTCGAAGGC
GTGCGCGCGT ACCGGACGGC CGACGGCAGC ACCGCGATCT TCCGCCTGCA CGAGCACACC
AAACGTCTGC TGAATTCGGC GAAGATCTTC CAGATGGACG TGCCGTTCGA CCGGGAAACC
CTCGAAGCCG CGCAGCTCGA CGTCGTGCGC GAGAACAAGC TCGAGTCGGG CTACCTGCGC
CCGATCATCT GGGTCGGCTC GGAAAAGCTC GGCGTGTCCG CGAAGGGCAA CACGATCCAC
GTCGCGATCG CCGCGTGGCC GTGGGGCGCG TACCTCGGCG AGGAAGGCCT CGCGAAGGGC
ATCCGCGTGA AGACGTCATC ATTCACGCGC CACCACGTGA ACGTGTCGAT GGTGCGCGCG
AAGGCGTCGG GCTGGTACGT GAACTCGATC CTCGCGAACC AGGAAGCGAC CGCCGACGGC
TACGACGAAG CGCTGCTGCT CGACGTCGAC GGCTACGTGT CGGAAGGCTC CGGCGAGAAC
TTCTTCCTGG TGAACAACGG CAAGCTGTAT ACGCCCGACC TGTCGTCGTG CCTCGACGGC
ATCACGCGCG ACACGATCAT CACGCTCGCG CGGGACGCAG GCATCCAGGT GATCGAGAAG
CGCATCACGC GCGACGAGGT CTACACGGCC GACGAAGCGT TCTTCACGGG CACGGCCGCC
GAAGTCACGC CGATCCGCGA ACTCGACAAC CGCACGATCG GCAGCGGCGC GCGCGGCCCC
GTGACGGAAA AGCTCCAGTC GGCGTTTTTC GATATCGTGT CCGGCAAGAA CGCGAAGTAC
GCGCACTGGC TGACGAAGGT CTGA
|
|---|
| Protein sequence | MSMADRDGKI WMDGKLIDWR DATIHVLTHT LHYGMGVFEG VRAYRTADGS TAIFRLHEHT
KRLLNSAKIF QMDVPFDRET LEAAQLDVVR ENKLESGYLR PIIWVGSEKL GVSAKGNTIH
VAIAAWPWGA YLGEEGLAKG IRVKTSSFTR HHVNVSMVRA KASGWYVNSI LANQEATADG
YDEALLLDVD GYVSEGSGEN FFLVNNGKLY TPDLSSCLDG ITRDTIITLA RDAGIQVIEK
RITRDEVYTA DEAFFTGTAA EVTPIRELDN RTIGSGARGP VTEKLQSAFF DIVSGKNAKY
AHWLTKV
|
|---|
| |