| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2611 |
|---|
| Symbol | |
|---|
| ID | 4311336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2874174 |
|---|
| End bp | 2875691 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638150449 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_774501 |
|---|
| Protein GI | 115352662 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGATCA AACCGTTCCG CTCGATCGAA TCGGCGGCCA CCGCGACGCA CAACTGGCGG
CGCCGCCAGA TCCTGCGCGC GGGCGCGTCG ACGCTGGTGC TCGGTCTCGC CGCACCGCGG
CTCGCGCACG CGTCGTCGGT GCTCGGCGTG CGCGTGTGGC CCGCGCGCGA TTACACGCGC
GTCACGATCG AATCGGACCA GCCGCTGCAG AATAGCCAAC AGCTGTTGCA GGGCCCCGAC
CGGCTCGTCG TCGACCTGAG CGGGCTCGAT CTCGATCAGG CCCTGCGCGA CCTCGTGTCG
AAGATCGCGC CGAACGATCC GCAGATCCAG TCGGTGCGCG TCGGCCAGTA CCAGCCGCAC
GTCGTGCGGA TGGTGTTCGA CCTGAAAGGC TCGGTGAAGC CGCAGGTGTT CACGCTGCCG
CCGGTGGGCA CCTACAAGTA CCGGCTCGTG TTCGACCTGT ATCCGGCCGT CGCGCCCGAT
CCGCTGTCCG ACCTGATCGC GCAGACGGAA CGCAAGGAAC AGGCGCTCAA CGACACCGCG
CGCGCGCAGC AAATGCAGCC GCCGACCTCG CTCGCGGGGC CGGCCGCGCC GTCGGCACCC
GCCGCGGGCG ACAACACCGA CGCGTTCTTC CAGCGCTTCG CGCAGAACAC GCCGGCCACG
CCGCGCACGC CGCCGGCCGC CGCGACGCCT TCCACGCCCG CGAAGCCGGC CGTCAAGCCG
CCGCCCGTCA TCGCGCGCCG CGACGACAGC GACGACGACG GCGACACCTA CAAGTTCACC
GCACCGAAAT CCGGCAAGGG CGGCACCATG CGCCTGCTGA CGGTCGCGAT CGATCCGGGC
CACGGCGGCG AGGATCCGGG CGCGATCGGC GGCGGCGGCA CGTACGAGAA GCACATCGCG
CTCGACATCG CGAAGAAGCT GCGCGCGAAG ATCGACGGCG CGCCGAACAT GCGCGCGATG
ATGACGCGCG ACGCCGACTT CTTCGTGCCG CTGAACGTGC GCGTGCAGAA GGCGCGCCGC
GTCGGCGCCG ACCTGTTCGT GTCGATCCAC GCGGATGCGT TCACGACGCC TTCCGCGCGC
GGCTCGTCGG TGTTCGCGCT GTCCGACCAC GGCGCGACGA GCGCCGCGGC ACGCTGGATG
GCGAACAAGG AAAACTCGTC GGACCTGATC GGCGGCATCA ACATCAAGAC GCAGGACGCG
GCCGTGAGCC GCGCGCTGTT CGACATGTCG ACGACCGCGC AGATCCGCGA TTCGCTGCGC
TACGGCGGCT ACGTGCTGAA GGAAGTCGGC GGCATCAACA AGCTGCACAA GGGTTCGGTC
GAGCAGGCCG GATTCGCGGT GCTGAAGGCA CCCGACATTC CGTCGATCCT CGTCGAGACC
GCGTTCATCA GCAACCCGGA AGAAGAGAGC CGGCTGAACG ACGAAAGCTA TCGCGACCAG
ATGGCCGACG CGATCTTCCG CGGCATCAAG CGTTACTTCG CCGCGAACCC ACCGCTCGCG
AAGAACCGGA TGGCCTGA
|
|---|
| Protein sequence | MLIKPFRSIE SAATATHNWR RRQILRAGAS TLVLGLAAPR LAHASSVLGV RVWPARDYTR
VTIESDQPLQ NSQQLLQGPD RLVVDLSGLD LDQALRDLVS KIAPNDPQIQ SVRVGQYQPH
VVRMVFDLKG SVKPQVFTLP PVGTYKYRLV FDLYPAVAPD PLSDLIAQTE RKEQALNDTA
RAQQMQPPTS LAGPAAPSAP AAGDNTDAFF QRFAQNTPAT PRTPPAAATP STPAKPAVKP
PPVIARRDDS DDDGDTYKFT APKSGKGGTM RLLTVAIDPG HGGEDPGAIG GGGTYEKHIA
LDIAKKLRAK IDGAPNMRAM MTRDADFFVP LNVRVQKARR VGADLFVSIH ADAFTTPSAR
GSSVFALSDH GATSAAARWM ANKENSSDLI GGINIKTQDA AVSRALFDMS TTAQIRDSLR
YGGYVLKEVG GINKLHKGSV EQAGFAVLKA PDIPSILVET AFISNPEEES RLNDESYRDQ
MADAIFRGIK RYFAANPPLA KNRMA
|
|---|
| |