Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_2390 |
Symbol | |
ID | 4309510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 2635269 |
End bp | 2637608 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638150224 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_774280 |
Protein GI | 115352441 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTCCG CCCGGTCCAA CCACACGCCG CCGACCCGGC CGCTGCGCGC GCCGCGCAAA TCGCGCCGGC GTGCGCTGTT CGCGATCCCG TTGCTCGGGA TGCTGGCGCT TGCGCTGCTG TGGGCGGTGA TCATCGCGCG ACTGTCGGTC GAAAAGGACA GCGCGTACAA GGAAGCGGCG GCATCCGCCG CGATCCTGTC GTCCGCGCTC GAGCAGCACA CCGTCAAGGC GATCCACCAG GTCGACCAGA TCACCCGCTT CGTCAAGTTC GAGTTCGAGA AATCGCCCGC GCACTTCAAC CTCGCGAGCG CGGTCGAAAA AGGCGTCGTG CCGAGCGACA CGCTGATCCA GGTCTCGCTC GTGAACGCGA AGGGTATCCT GTTCGCGAAC ACGGCCGACA TTCATCCGCA GCCGATCAAC CTGTCGGACC GCGAACATTT CAAGGTCCAT CTCGCGCACA ACGACGACCG CCTGTACATC AGCAAGCCGG TGTTCGGCCG CGTGTCGAGC CACTGGACGC TGCAGATGAC GCGGCGGCTG AACAACCCGG ACGGCAGCTT CGCGGGCATC GTCGTGGTGT CGGAAGACCC GAGCTACTTC ACGAACGACT TCTACAACAA CGCGGCGATC GGCAAGGAAG GCGTGATCGC CGTGGTGTCC GACACGGGCG CGGTGCTCGC GCGGCGCACC GGCTCGGTCA GCAACGCACC GGGTGCGTTC TCCGCGTCGG GCGTGTACCC GATCGCCGAG CGCGTGACGG GCACGATCAT CGACCCGATC GACGGCGTGA CGCGCATCGT GTCGTACCGC CACCTCGACG GCTACCCGCT CGCGGTGATG GTCGGGCTGT CGCAGACCGA GGAATTCGCG GACTACTCCC ACACGCGCAA CGTCTACCTG CTGATGACGA GCTTCATCAC GCTCGCGATG CTCGCGTTCT TCAGCGTCGC GACGGGGCTG ATCGGCAAGC TGCTGGGGCG CGAGCGCGAG ATGACCCAGC TCGCCGAATA CGACCTGCTC ACCGGCCTCG CGAACCGCTA CGCGACGCTG CGCGGGCTGC GCAACGACGT GTCGATGCCG GCCAGCCTGT CGCGGCTCGG CCTGCTGTTC ATCGACCTCG ACAACTTCAA GACCGTCAAC GACACGCTCG GCCACAACGC CGGCGACATC GTGCTGCAGA TGACCGCGTC GCGCCTGTCG GATGCGGTCG GCGACGAAGG CTCGCTCGCG CGGATCGGCG GCGACGAGTT CGTGGTCGTG ATGAAGGGCG ACGACATCGA ACGGCGCGCG GTGCGGCTCG CGGAGGCGAT CATCCGGATG TTCGGCGAGC CGTTCGACGT GCGCGGCAGT TCGTTCGTGC TGCACGCCAG CATCGGCATC GCGCTGCACA GCGTCGCGAA CGAAAGCGAG ATCGACCTGC TGAAGAAGGC CGACCTCGCG ATGTACAGCG CGAAGGACGC CGGCAAGAAC TGCTATCAGT TCTACGCGCC GCACCTGTCG CACCGCGCGG ACCACCTGAT GCGCTGGGAA CAGCAGTTGC GCGTCGCGCT CGCCGAAGGG CAGCTGTTCC TCGCCTACCA GCCGAAGATC GACCTGACGC ACCGCACGAT CACCGGCTTC GAGGCGCTCG CGCGCTGGGA TCACCCCGAG CACGGGATCA TTTCCGCGAA CGAATTCATT TCGATCGCCG AATCGACGGG CCTGATCGTG CCGATCGGCG ACTTCGTGAT CCGCACCGCG TGCGAGCAGA TCGCGCGCTG GCGCGACGAC GGCCACGACA CGCTGACGCT CGCGATCAAC ATCTCGCCGG TGCAATTCTG GCGCGGCGAC CTGATCGAGA CGATTTCCCA GGCGCTGCAG GACACCGGCA TCGACGCGAA CCGGCTCGAG ATCGAGATCA CCGAGACCGC GATGATGGAA TACCCGGAGC TCGTGTCCGA GAAGATCGTC GCGCTGAAGA AGCTCGGCAT CCGGATCGCG CTCGACGATT TCGGCACCGG CTATTCATCG CTGTCGTACC TGCACCGCTT CTCCGTCGAC ACGCTGAAGG TCGACCGCTC GTTCGTGCAG GCCATCCCGA ACGATCGCAG CGTGTGCGTG ATGGTGTCGT CGATCGTGCA TCTCGCGCGC TCGCTCGGCC TGACGGTCGT CGTCGAGGGC ACCGAGACCG AGGAGCAGAT CGCGTGGCTG TCCGCGCTCG GCGAGATCGA GGCGCAGGGC TTCCTGTTCT CGCGCCCCGT GCCGGCCGAC GCGATTCCCG CGCTGATCGC ACGCTTCGGC GTGCGCGGCG CCCGGCCGGA CGTCCTCACG CACCGCGCGA CCGGCAGCAC GAGCGCCTGA
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Protein sequence | MSSARSNHTP PTRPLRAPRK SRRRALFAIP LLGMLALALL WAVIIARLSV EKDSAYKEAA ASAAILSSAL EQHTVKAIHQ VDQITRFVKF EFEKSPAHFN LASAVEKGVV PSDTLIQVSL VNAKGILFAN TADIHPQPIN LSDREHFKVH LAHNDDRLYI SKPVFGRVSS HWTLQMTRRL NNPDGSFAGI VVVSEDPSYF TNDFYNNAAI GKEGVIAVVS DTGAVLARRT GSVSNAPGAF SASGVYPIAE RVTGTIIDPI DGVTRIVSYR HLDGYPLAVM VGLSQTEEFA DYSHTRNVYL LMTSFITLAM LAFFSVATGL IGKLLGRERE MTQLAEYDLL TGLANRYATL RGLRNDVSMP ASLSRLGLLF IDLDNFKTVN DTLGHNAGDI VLQMTASRLS DAVGDEGSLA RIGGDEFVVV MKGDDIERRA VRLAEAIIRM FGEPFDVRGS SFVLHASIGI ALHSVANESE IDLLKKADLA MYSAKDAGKN CYQFYAPHLS HRADHLMRWE QQLRVALAEG QLFLAYQPKI DLTHRTITGF EALARWDHPE HGIISANEFI SIAESTGLIV PIGDFVIRTA CEQIARWRDD GHDTLTLAIN ISPVQFWRGD LIETISQALQ DTGIDANRLE IEITETAMME YPELVSEKIV ALKKLGIRIA LDDFGTGYSS LSYLHRFSVD TLKVDRSFVQ AIPNDRSVCV MVSSIVHLAR SLGLTVVVEG TETEEQIAWL SALGEIEAQG FLFSRPVPAD AIPALIARFG VRGARPDVLT HRATGSTSA
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