| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2384 |
|---|
| Symbol | |
|---|
| ID | 4309365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2628960 |
|---|
| End bp | 2630420 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638150218 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_774274 |
|---|
| Protein GI | 115352435 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCACCG TCCCTCTCGC CCAGATCCCC GCGCCGCACG ATACGGCCAC GCTCACGCTC
GTCGACCAGC TTGTCCAGTG GGCGCGGCGG CGCATCGACG AGCGTGTGTT CCGGCCCGGC
ATGCGCATGC CGTCGATCCG CAAGCTCGCG CTCGACAAGA GCGTGTCGCG TTTCACCGTC
GTCGAGGCGT ACGAGCGGCT CGTCGCGCAG GGGTATCTCG ATTCGCGGCG CGGCTCCGGT
TTCTACGTGC GCGAGCGCAC GGCCGTCGGT CCGCAGCCGG TCGACAACGT GGCGCGCGTG
GCGGAGGCCG CGCCCGTGCA CAACACCATC GACGTCGTCT GGCTGCTGCG CAACATGCTG
CACACCGCCA GCCCGGAAAA GGGGCCGGGT CTCGGCTACC TGCCGGGCCG TTGGCTCGAC
GGCGAGCTGA TCACCGGCTC GCTGCGCGCG CTCGGGCGCC AGTCCGGCGC CCAGATGCTC
GGCTTCGGCA CACCGCAGGG CTTTCTGCCG CTGCGCCAGC AACTGCAGAC GCGGCTCGCG
GAAGTCGAGA TCGGCGCGAA GCCCGAGCAG CTCGTGATGG TGTCGGGCAT CACGCAGGCG
ATCGACCTGA TCTCGCGCAT CTACGTGCAG CCGGGCGACG CGGTGATCGT CGGCGATCCC
GCATGGTTCC AGATGTTCGG CCGCTTTGCG TCGCAGGGTG CGCAGCTCGT CGGCATGCCG
TATACGCCCG ACGGCCCCGA TCTCGACGCG CTGGAAACGC TCGTGCAGAT GTGGCGGCCG
AAGATGCTCG TGATCAATTC GGTGCTGCAG AACCCGACCG GCACGTCGCT GTCGGCCGCG
CAGGCGTTCC GGATCCTGAA GCTCGCGGAG GCGTACGACT TTCTCGTCGT CGAGGACGAC
GTGTACGGCG ACCTGTGCCC GCCGAGCTAC CCGGCGACGC GACTCGCGAG CCTCGACCAG
TTGAAGCGCG TGATCTACCT CGGCAGCTAT TCGAAAACGC TCGCGGCGAA TCTGCGGGTC
GGCTATGTCG CCTGCGCGCC GGAGATCGCG AAGGCGATCA CCGACCAGAA GATGCTGGTC
GGGATGACGA CGCCGGAGCT CAACGAGCGC GTGCTCTACA AGATCCTGAC CGAAGGGCAT
TACCGGCGCC ACGTCGAGCG CTTGCGCGCG CGGCTCGACG GCGTGCGCGA CAAGACCGCG
CGGATGCTCG AGCGCACCGG GCTGCGGCTG TTCGCGATGC CGGCCGCCGG GATGTTCCTG
TGGGCCGACA CGGGCGTCGA TTCGGACGCG CTCGCGGCCG CCGCGCACGA GGAAGGATTC
CTGCTGACGC CGGGCAGCCT GTTCTCCCCG CAGCAGTCGC CGTCGACGTG GACGCGCTTC
AACGTCGCGA ACTGCGGGGA TCCGGCGCTG CCGGGCTTTC TCGCGCGCTA TATCGAGTCG
GCGGCGCGGC GCGCGTCGTG A
|
|---|
| Protein sequence | MSTVPLAQIP APHDTATLTL VDQLVQWARR RIDERVFRPG MRMPSIRKLA LDKSVSRFTV
VEAYERLVAQ GYLDSRRGSG FYVRERTAVG PQPVDNVARV AEAAPVHNTI DVVWLLRNML
HTASPEKGPG LGYLPGRWLD GELITGSLRA LGRQSGAQML GFGTPQGFLP LRQQLQTRLA
EVEIGAKPEQ LVMVSGITQA IDLISRIYVQ PGDAVIVGDP AWFQMFGRFA SQGAQLVGMP
YTPDGPDLDA LETLVQMWRP KMLVINSVLQ NPTGTSLSAA QAFRILKLAE AYDFLVVEDD
VYGDLCPPSY PATRLASLDQ LKRVIYLGSY SKTLAANLRV GYVACAPEIA KAITDQKMLV
GMTTPELNER VLYKILTEGH YRRHVERLRA RLDGVRDKTA RMLERTGLRL FAMPAAGMFL
WADTGVDSDA LAAAAHEEGF LLTPGSLFSP QQSPSTWTRF NVANCGDPAL PGFLARYIES
AARRAS
|
|---|
| |