| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2298 |
|---|
| Symbol | |
|---|
| ID | 4309095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2534204 |
|---|
| End bp | 2535748 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638150132 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_774188 |
|---|
| Protein GI | 115352349 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.16398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACA AGCTGATCAT TTTCGATACG ACGTTGCGTG ACGGTGAACA ATCGCCCGGC
GCGTCGATGA CGAAGGAAGA GAAAATCCGC ATCGCGAAGC ATCTCGAGCG GATGAAGGTC
GACGTGATCG AGGCCGGCTT CGCGGCCAGC TCGAACGGTG ACTTCGACGC GATCCACACG
ATCGCCGGTC TCGTGAAGGA CAGCACGATC TGCTCGCTGG CGCGCGCCAA CGACAAGGAC
ATCCAGCGTG CGGCCGACGC GTTGAAGCCG GCCAACAGCG CGCGGATCCA CACGTTCATC
GCGACGTCGC CGCTGCACAT GGAGAAGAAG CTGCGGATGA CGCCGGATCA GGTGTTCGAG
CAGGCGCGCC TCGCCGTGCG CTTCGCGCGC AAGTTCACCG ACAACGTCGA ATTCTCGCCG
GAAGACGGCA GCCGCTCGGA TCTCGACTTC CTGTGCCGGG TGCTGGAAGC CGTGATCGCC
GAAGGGGCGA CGACGATCAA CATCGCCGAC ACGGTCGGCT ACGGCGTGCC GGAACTCTAC
GGCAACCTCG TGAAGACGCT GCGCGAACGC ATTCCGAACT CGGACAAGGC GATCTTCTCC
GTGCATTGCC ACAACGACCT CGGGATGGCG GTGGCGAACT CGCTCGCCGG CGTGAAGATC
GGCGGTGCGC GGCAGGTGGA GTGCACGATC AACGGTCTCG GTGAGCGCGC GGGCAACACG
TCGCTCGAGG AAATCGTGAT GGCCGTGAAG ACCCGCAAGG ACTATTTCGG CCTCGACGTG
GGCCTCGACA CCACGCAGAT CGTCCCGACG TCGAAGCTCG TGTCGCAGAT CACCGGTTTC
GTCGTGCAGC CGAACAAGGC CGTGGTCGGC GCGAACGCGT TCGCGCACGC GTCGGGCATC
CATCAGGACG GCGTGCTGAA GGCGCGCGAC ACGTACGAGA TCATGCGCGC GGAAGACGTG
GGCTGGACCG CGAACAAGAT CGTGCTGGGC AAGCTGTCGG GCCGCAACGC GTTCAAGCAG
CGTCTGCAGG AGCTCGGCGT GTCGCTCGAC AGCGAAACCG AACTGAACGC CGCGTTCATG
CGCTTCAAGG ATCTGGCCGA CCGCAAGTCG GATATTTTCG ACGAAGACAT CATCGCGATC
GTCTCCGAGG AGTCGGCGTT CGCGCAGGAG CAGGAGCACT ACAAGTTCGT GTCGCTGTCG
CAGCGCTCGG AAACCGGCGA GCAGCCGCAG GCCAAGGTCG TGTTGGCGCT CGATGGTAAG
GAAGTGACCG GCGAGGCACG TGGCAACGGC CCGGTCGACG CGACGTTCAA CGCGATCGAG
GGCGAAGTCG GCAGCGGCTC GGAACTGCTG CTGTACTCGG TGAACGCGAT CACGACCGGT
ACGCAGGCGC AGGGTGAAGT GACGGTGCGG CTGTCGAAGA GCGGGCGGAT CGTCAACGGC
GTCGGCACCG ACCCCGATAT CGTCGCGGCT TCCGCGAAGG CGTACATCGC CGCGCTGAAC
AAGCTGCACT CGAAGGACGA TAAGCTCAAC CCGCAGCGCT CGTAA
|
|---|
| Protein sequence | MTDKLIIFDT TLRDGEQSPG ASMTKEEKIR IAKHLERMKV DVIEAGFAAS SNGDFDAIHT
IAGLVKDSTI CSLARANDKD IQRAADALKP ANSARIHTFI ATSPLHMEKK LRMTPDQVFE
QARLAVRFAR KFTDNVEFSP EDGSRSDLDF LCRVLEAVIA EGATTINIAD TVGYGVPELY
GNLVKTLRER IPNSDKAIFS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNT
SLEEIVMAVK TRKDYFGLDV GLDTTQIVPT SKLVSQITGF VVQPNKAVVG ANAFAHASGI
HQDGVLKARD TYEIMRAEDV GWTANKIVLG KLSGRNAFKQ RLQELGVSLD SETELNAAFM
RFKDLADRKS DIFDEDIIAI VSEESAFAQE QEHYKFVSLS QRSETGEQPQ AKVVLALDGK
EVTGEARGNG PVDATFNAIE GEVGSGSELL LYSVNAITTG TQAQGEVTVR LSKSGRIVNG
VGTDPDIVAA SAKAYIAALN KLHSKDDKLN PQRS
|
|---|
| |