| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2289 |
|---|
| Symbol | tpiA |
|---|
| ID | 4309086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2524667 |
|---|
| End bp | 2525422 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638150123 |
|---|
| Product | triosephosphate isomerase |
|---|
| Protein accession | YP_774179 |
|---|
| Protein GI | 115352340 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0149] Triosephosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000785898 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAAC AACGAACAAA GCGAGTGATC GGCAACTGGA AGATGCACGG CCGGCTGGCC
GGCAACCAGG CGTTGCTCAA TGAAGTGGTG CAGGGCGCGG GCGCGGTGGC GGCTGAAACG
TCGATCGGCG TGTGCGTGCC GTTCCCGTAC CTCGCGCAGG TTCAGGCGCA GCTCGGCGCT
GGCCGTGTCG TGTTCGGCGC GCAGGACGTG TCCGCGCACG AGCAGGGCGC GTTCACCGGC
GAAGTCGCTG CGGCGATGGT GGCGGAGTTC GGTGCGCATT ATGCGATCGT CGGTCACTCG
GAACGTCGCG CGTATCACGG CGAGCGCAAC GAGACCGTCG CGGCGAAGAC GCAGCGCGCG
CTCGCGGCGG GCCTCACGCC CGTCGTGTGC GTCGGCGAAA CGCTCGACGA GCGTGAAGCG
GGCGCGACCG AGCAGGTGGT CGGTGCGCAG CTCGACGCGG TGCTGGCCGT GCTGACGGCT
GACGAAGCAG CCCGCATCGT CGTCGCGTAC GAGCCGGTGT GGGCAATCGG CACCGGCAAG
AGCGCGACGT CGGCGCAGGC GCAGGATGTG CACGCGTTCC TGCGTGCGCG TCTCGCGGCG
AAGGGTGCGG CGCACGTGTC GGTGCTGTAC GGCGGCAGCG TGAAGCCGGA CAACGCGGAA
GAGCTGTTCG CGCAGCCGGA CATCGACGGC GGCCTGATCG GCGGCGCGTC GCTGAAGGCG
CAAGATTTCC TGGCGATCTG CCGGGCCGCA CGTTGA
|
|---|
| Protein sequence | MSKQRTKRVI GNWKMHGRLA GNQALLNEVV QGAGAVAAET SIGVCVPFPY LAQVQAQLGA
GRVVFGAQDV SAHEQGAFTG EVAAAMVAEF GAHYAIVGHS ERRAYHGERN ETVAAKTQRA
LAAGLTPVVC VGETLDEREA GATEQVVGAQ LDAVLAVLTA DEAARIVVAY EPVWAIGTGK
SATSAQAQDV HAFLRARLAA KGAAHVSVLY GGSVKPDNAE ELFAQPDIDG GLIGGASLKA
QDFLAICRAA R
|
|---|
| |