Gene Bamb_2178 details

Gene Information

• Locus tag: Bamb_2178
• ID: 4310084
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 2394843
• End bp: 2396930
• Gene Length: 2088 bp
• Protein Length: 695 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 638150003
• Product: oligopeptidase A
• Protein accession: YP_774068
• Protein GI: 115352229
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0339] Zn-dependent oligopeptidases

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.61297
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGCCA GCGCCAATAC CAATCCGCTC CTCGATTTCT CCGGCCTGCC CCGCTTCGGC 
GAGATTCGTC CGGAACATGT GACGCCCGCG CTCGACACGC TGCTCGACAC CGCCAACCGC 
GCGGTCGACA CCGCGAGCGC ACCCGCGACG CCGGCGACCT GGGCCACGAT CGTCGAGACG 
GTCGAGCAGG CGACGGAGCC GCTCGGGCGC GCATGGGGCG TCGTCGGCCA TCTGAACGCG 
GTCGCCGATA CGCCGGAACT GCGGGCCGCC TACGGCGAAA ACCTGCCACG CGTGACCGAA 
TTCTGGTCGA GCGTCGGCCA GAACCTCGCG CTGTACGAGA AGTACAAGGC GATCGCCGCG 
AGCGCCGAAT ACGCGACGCT GTCCGCCGAG CGCAAGAAGA TCCTCGACAA CGCGCTGCGC 
GATTTCCGCC TGTCGGGCGC CGAGCTGCCG GAAGACCAGA AGCCGCGCTT CGCGGAACTG 
CAGGAGCAGC AGGCCGCGCT GTCGAAGGCG TTCTCCGACC ACGTGCTCGA CGCGACCAAC 
GCGTATGCGT ACTTCGCGCA GGACGAGGCC GAACTCGCCG GCCTGCCGGG CGACGCGATC 
GAAGCGGCCC GCGAAGCCGC GCAGAAGGAA GGCAAGGAAG GCTGGAAATT CACGCTGCAC 
TTCCCGTCCT ACTTCCCGGT GCTGCAATAC GCGGAGAACC GCGCGATGCG CGAGACGCTG 
TATCGCGCGT ATGCGACGCG CGCCTCCGAA CTCGGGCCGC AGTACGGCGG CGGCAAGGCC 
GAATGGGACA ACACGGCGAT CGTCGCCGAC GAGCTGAAGC TGCGCCGTGA AGAGGCACAG 
ATGCTCGGCT ACCGCAACTT CGCCGAAGTG TCGCTCGCGC CGAAGATGGC CGAGTCGCCG 
CAGCAGGTCA TCGCGTTCCT CGAGGATCTC GCGACGCGCG CGCGCCCGCA CGCCGACAAG 
GACTGGGACG AACTGCGCGC GTTCGCCGCG AAGGAACTCG GCCTGACCGA ACTCGCGCCG 
TGGGACGTCG CGTTCGCGGC CGAGCGGCTG CGCCAGCAGC GCTACGCGTT CTCGGAAAAC 
GAGGTCAAGC AGTACTTCCC GGAACCGGCC GTGCTGAAGG GCCTCTTCAC CGTCACCGAA 
ACGCTGTTCG GCGTGCGGAT CAAGCCGGAC GACGCGCCGG TCTGGCACCG GGACGTGCGC 
TTTTTCCGCG TCGAGAACCG CGACGGCTCG CTCGTCGCGC AGTTCTATCT CGACCTGTAT 
GCACGCGAAG GCAAGCGCGG CGGCGCGTGG ATGGACGATG CGCGTGCGCG CGCGAAGCGC 
GGCGGCACCG TGCAGACGCC GGTCGCGTAC CTGACCTGCA ACTTCTCGGC GCCGGTCGGC 
GGCAAGCCCG CGTGCTTCAC GCACGACGAA GTCATCACGC TGTTCCATGA ATTCGGCCAC 
GGGCTGCATC ACATGCTCAC GCGCGTCGAC GAGCTCGGCG TGTCGGGCAT CAACGGCGTC 
GAATGGGATG CGGTCGAGCT GCCGTCGCAG TTCATGGAAA ACTTCTGCTG GGAATGGGAC 
GTGCTGTCGT CGATGTCGTC GCACATCGAT ACCGGCGCGT CGCTGCCGCG CGAGCTGTTC 
GACAAGATGA TCGCCGCGAA GAACTTCCAG AGCGGCCTCG GCACGCTGCG CCAGATCGTG 
TTCTCGATGT TCGACATGCT GCTGCACGTC GACTTCGACC CGGCCGGCGC GACCGGCGTG 
AATGCGTTCG CGCGCGAGAT CAACGAGCGC TACCACGTGA TCCCGCAGGC AGCGTTCTCG 
CGCTGGCCGA ACACGTTCAG CCACATCTTC GCGGGCGGCT ATGCGGCCGG CTACTACAGC 
TACAAGTGGG CCGAGGTGCT GTCGGCCGAC GCGTACGCGG CGTTCGAGGA AGCGGCCGCC 
GCAGGCGGCA GCGTGCTCGA CGCGGCGACC GGCACGCGCT ATCGCCGCGA GATCCTCGAA 
GTCGGCGGCA GCCGCCCGGC GATGGATTCG TTCAAGGCGT TCCGCGGCCG CGAGCCGGAA 
ATCGACGCGC TGCTGCGCCA CAACGGGATG ACCTCCGCCG CGCACTGA 

 

Protein sequence

MSASANTNPL LDFSGLPRFG EIRPEHVTPA LDTLLDTANR AVDTASAPAT PATWATIVET 
VEQATEPLGR AWGVVGHLNA VADTPELRAA YGENLPRVTE FWSSVGQNLA LYEKYKAIAA 
SAEYATLSAE RKKILDNALR DFRLSGAELP EDQKPRFAEL QEQQAALSKA FSDHVLDATN 
AYAYFAQDEA ELAGLPGDAI EAAREAAQKE GKEGWKFTLH FPSYFPVLQY AENRAMRETL 
YRAYATRASE LGPQYGGGKA EWDNTAIVAD ELKLRREEAQ MLGYRNFAEV SLAPKMAESP 
QQVIAFLEDL ATRARPHADK DWDELRAFAA KELGLTELAP WDVAFAAERL RQQRYAFSEN 
EVKQYFPEPA VLKGLFTVTE TLFGVRIKPD DAPVWHRDVR FFRVENRDGS LVAQFYLDLY 
AREGKRGGAW MDDARARAKR GGTVQTPVAY LTCNFSAPVG GKPACFTHDE VITLFHEFGH 
GLHHMLTRVD ELGVSGINGV EWDAVELPSQ FMENFCWEWD VLSSMSSHID TGASLPRELF 
DKMIAAKNFQ SGLGTLRQIV FSMFDMLLHV DFDPAGATGV NAFAREINER YHVIPQAAFS 
RWPNTFSHIF AGGYAAGYYS YKWAEVLSAD AYAAFEEAAA AGGSVLDAAT GTRYRREILE 
VGGSRPAMDS FKAFRGREPE IDALLRHNGM TSAAH