| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2124 |
|---|
| Symbol | |
|---|
| ID | 4310257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2335237 |
|---|
| End bp | 2337897 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638149949 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_774014 |
|---|
| Protein GI | 115352175 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGC TGTCGCCCGA GGCCTTCGCT GGCCACACCC CGATGATGCA GCAGTACCTG
CGCATCAAGG CCGATCACCC CGACACGCTC GTCTTCTATC GGATGGGCGA CTTCTACGAG
CTGTTCTTCG AAGACGCGGA GAAGGCCGCG CGCCTGCTCG ACCTGACCCT CACGCAGCGC
GGCGCATCGG CCGGCACGCC GATCAAGATG GCCGGCGTCC CGCATCACGC GGTCGAACAG
TATCTGGCGA AACTCGTGAA GATGGGCGAA TCGGTCGCGA TCTGCGAGCA GATCGGCGAC
CCGGCCACAT CGAAAGGGCC GGTCGAGCGC AAGGTCGTGC GCGTCGTCAC GCCCGGCACG
CTGACCGATG CCGCCCTGCT GTCCGACAAG AACGACGTCT ACCTGCTTGC AATGTGCACG
GGCCACAACA AGCGCGGCGT CGCGGTCAAC ATCGGCCTCG CATGGCTGAA CCTCGCGAGC
GGCGCACTGC GGCTCGCCGA AATCGAACCC GACCAGCTCG GCACCGCGCT CGAACGCATC
CGCCCTGCCG AGATCCTGAC GGCGGACGGC GCAACCGACG CGGTGCCCGC CGGCGCCGGC
GCGATCAAGC GCGTACCGGC ATGGCACTTC GACATCGCAT CGGGCACGCA GCGCCTGTGC
GACCAGCTCG ACGTCGCGGG CCTCGACGGC TTCGGCGCGC ATTCGCTGAC GAGCGCATGC
GGCGCCGCGG GCGCGCTGCT GCTGTACGCG GCGGCCACGC AGGGCCAGCA ACTGCGTCAC
GTGCGCAGCC TGAAGGTCGA GAACGAAACG GAATACATCG GGCTCGATCC GGCGACGCGC
CGCAACCTCG AGCTGACCGA AACGCTGCGC GGCACCGAAT CGCCGACGCT GTACTCGCTG
CTCGACACGT GCTGCACGAC GATGGGCAGC CGCCTGCTGC GTCACTGGCT GCATCACCCG
CCGCGCGCGT CGGTCGCCGC GCAATCGCGC CAGCAAGCGA TCGGCGCACT GCTCGATGCG
CCCGCGGACG CGAGCCTCGA CGCACTGCGC AGCGCGCTGC GCCAGATCGC CGACGTCGAA
CGGATCACCG GGCGTCTCGC GCTGCTGTCC GCGCGGCCGC GCGACCTGTC GAGCCTGCGC
GATACGTTCG CCGCGCTGCC GGCGCTGCGT GAGCGCATCA GCGCGATCGT CGCGAACGCG
GATGCGCTCA CGCGCGTCGA CGCGGCGCTC GCACCGCCCG CCGAATGCCT CGACCTGCTG
ACGAGCGCGA TCGCCCCCGA GCCGGCCGCG ATGGTGCGCG ACGGCGGCGT GATCGCACGC
GGCTACGACG CGGAGCTCGA CGAGCTGCGC GACATCTCCG AGAACTGCGG CCAGTTCCTG
ATCGATCTCG AAGCGCGCGA GCGCACCCGC ACGGGCATCG CGAACCTGCG CGTCGAATAC
AACAAGGTGC ACGGCTTCTA CATCGAGGTC ACGCGCGGCC AGACCGACAA GGTGCCCGAC
GACTATCGCC GCCGCCAGAC GCTGAAGAAT GCCGAGCGCT ACATCACGCC CGAACTGAAG
ACCTTCGAGG ACAAGGCGCT TTCCGCGCAG GAACGCGCAC TGGCCCGCGA GCGCGCGCTG
TACGACGGCG TGCTGCAGGC GCTGCTGCCG TTCATTCCCG AATGCCAGCG CGTCGCATCG
GCGCTCGCGG AGCTTGACGT GCTCGCCGCG TTCGCCGAGC GTGCACGCAC GCTCGACTGG
GTCGCACCGA CCTTCACCGA CGAAATCGGC ATCGAGATCG AACAGGGGCG CCATCCGGTC
GTCGAAGCGC AGGTCGAGCA GTTCATCGCG AACGACTGCC GGTTCGGCGC CGAGCGCAAG
CTGTTGCTGA TCACCGGCCC GAACATGGGC GGTAAGTCGA CGTTCATGCG CCAGACGGCG
CTGATCGCAC TGATGGCGTA TGTCGGCAGC TACGTGCCCG CGAAGTCGGC CTGCTTCGGC
CCGATCGACC GCATCTTCAC GCGGATCGGC GCGGCCGACG ACCTCGCCGG CGGCCGCTCG
ACGTTCATGG TCGAGATGAC CGAAGCCGCC GCGATCCTCA ACGACGCGAC GCCGCAAAGC
CTCGTGCTGA TGGACGAAAT CGGCCGCGGC ACGTCGACGT TCGACGGCCT CGCGCTTGCA
TGGGCCATCG CGCGTCACCT GCTCGCGCAA AACGGCTGCT ACACGCTGTT CGCGACGCAC
TACTTCGAGC TGACGCAACT GCCGGCCGAA TTCCCGCAAG CGGCGAACGT CCACCTGTCG
GCCGTCGAGC ACGGCCACGG CATCGTGTTC CTGCACGCAG TCAACGAAGG TCCGGCGAAC
CAGAGCTACG GGCTGCAGGT TGCGCAGCTC GCGGGCGTAC CGGCGCCGGT GATCCGTGCC
GCACGCAAGC ATCTCGCGTA TCTCGAGCAG CAGTCGGCCA CGCAGAACAC GCCGCAGCTC
GATCTCTTCA GCGCGCCGCC CGCCGCGGCG GCCGACGAAC TCGAATGCGC GGATGCGCCG
GCGGTCTCCG CCCTCCCGCA TCCGGCGCTC GAAAAGCTGC GCGACATCGA TCCCGACGAC
CTCAAGCCGC GCGACGCGCT CGACCTGCTG TACGAACTGC GCACGCTCGT CCGCTCGCAC
GATGCCGACG GGCACGCATA A
|
|---|
| Protein sequence | MTTLSPEAFA GHTPMMQQYL RIKADHPDTL VFYRMGDFYE LFFEDAEKAA RLLDLTLTQR
GASAGTPIKM AGVPHHAVEQ YLAKLVKMGE SVAICEQIGD PATSKGPVER KVVRVVTPGT
LTDAALLSDK NDVYLLAMCT GHNKRGVAVN IGLAWLNLAS GALRLAEIEP DQLGTALERI
RPAEILTADG ATDAVPAGAG AIKRVPAWHF DIASGTQRLC DQLDVAGLDG FGAHSLTSAC
GAAGALLLYA AATQGQQLRH VRSLKVENET EYIGLDPATR RNLELTETLR GTESPTLYSL
LDTCCTTMGS RLLRHWLHHP PRASVAAQSR QQAIGALLDA PADASLDALR SALRQIADVE
RITGRLALLS ARPRDLSSLR DTFAALPALR ERISAIVANA DALTRVDAAL APPAECLDLL
TSAIAPEPAA MVRDGGVIAR GYDAELDELR DISENCGQFL IDLEARERTR TGIANLRVEY
NKVHGFYIEV TRGQTDKVPD DYRRRQTLKN AERYITPELK TFEDKALSAQ ERALARERAL
YDGVLQALLP FIPECQRVAS ALAELDVLAA FAERARTLDW VAPTFTDEIG IEIEQGRHPV
VEAQVEQFIA NDCRFGAERK LLLITGPNMG GKSTFMRQTA LIALMAYVGS YVPAKSACFG
PIDRIFTRIG AADDLAGGRS TFMVEMTEAA AILNDATPQS LVLMDEIGRG TSTFDGLALA
WAIARHLLAQ NGCYTLFATH YFELTQLPAE FPQAANVHLS AVEHGHGIVF LHAVNEGPAN
QSYGLQVAQL AGVPAPVIRA ARKHLAYLEQ QSATQNTPQL DLFSAPPAAA ADELECADAP
AVSALPHPAL EKLRDIDPDD LKPRDALDLL YELRTLVRSH DADGHA
|
|---|
| |