Gene Bamb_2094 details

Gene Information

• Locus tag: Bamb_2094
• ID: 4309390
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: -
• Start bp: 2299315
• End bp: 2301198
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 638149918
• Product: extracellular solute-binding protein
• Protein accession: YP_773984
• Protein GI: 115352145
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4166] ABC-type oligopeptide transport system, periplasmic component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAAGG GTTCGCCCCG GACCACCGCC GCGCGCCTCC GATCCGGCGC CGCGCAGGCG 
GTCCGCGCCG CCGGCCGCAC CGCGGCCGTA TGGACAATAC AGGCGGTACT GGCCGCGACG 
GCCGCGCATG CGGCATATGC GATCGCGCAG TACGGGGAGC CGAAATATCC GCCGGGCTTC 
AAGCATTTCG ACTACGTGAA CCCGGATGCG CCGAAGGGCG GCACGCTCGT GCTAGCTAAT 
CCGAGCCGGC TGACGTCGTT CGACAAGTTC AATCCGTTCA CGATGCGCGG CAATGCCGCG 
CCGGGCATCG ACATGCTGTT CGAGAGCCTC ACGACCGGCA GCTCGGACGA ACCGGCGTCC 
GCCTACGGGC TGCTCGCCGA CGACATCGAG ATCGCGCCGG ACCGCCGCTC GGTCACGTTC 
CACCTGAACC CGCGCGCGCG CTTCTCGAAC GGCGACCCGG TCACGGCCGA CGACGTCAGG 
TTTTCGTTCG AGACGCTGAA GAGCAAGCAG GCCGCGCCAC AGTTCGGCGC GTATTTCGCT 
GAAATCGCGA AGGCCGTCGT GATCGACCGC GCGACCGTGC GGTTCGAATT CCGCAGCCCG 
AACCGCGAAC TGCCGCTGAT CGCCGGCGGC GTGCCGGTGT TCTCGCGCAA GTGGGGGCTG 
CGCGCGGACG GTTCGCGGAT TCCGTTCGAC CAGCTCGCGT TCGAGCAGCC GATCGGCAGC 
GGCCCGTATC TGATCGAGCG CCACGACAAC GGCCGCACCA TTACGTACCG GCGCAATCCC 
GCGTACTGGG GCGCCGACCT GCCGGTGCGG GTCGGCACCC ACAACTTCGA GCGGATCGTC 
TACAAGCTGT ACGGCGACGG CGTCGCGCGG CTCGAGGCGT TCAAGGCCGG CGAGTACGAC 
GTGCTGGTCG AATACATCGC GCGCAACTGG GCGCGGCGCG ACGTCGGCAA GCGCTTCGAC 
AGCGGCGAGC TCGTCAAGCG CGAATTCCGC CAGCACAACG GCGCGGGCAT GCAGGGTTTC 
TTCATGAACC TGCGCCGGCC GTTGTTTCGC GACGTGCGCG TGCGCCAGGC GCTCGATCTC 
GCGTTCGACT TCGAATGGCT GAACCGCCAG TTGTTCTATG GCGCGTACAC GCGCCTCGAC 
AGCTATTTCG CCGACACCGA CCTGCAGGCA ACCGGCACGC CGGGCCCGGG CGAGTTGAAG 
CTGCTGGAAC CGTTGCGCGC GCAACTCGAT CCGGCCGTGT TTGGCCCGAT GGTCTCGCAA 
CCGAGCACGA ACCCGCCGGG CTCGCTGCGC GCGAACCTGC TGAAGGCGCG CGCGCTGCTC 
GCGGAGGCCG GCTGGACCTA CCGCGACGGC GCGCTGCGCA ACGCGCAGGG CGAGCCGTTC 
GAGTTCGAGA TCCTCGACGA TTCGGGCGCT GCGATGGAAG GCATCGTGAC GGCCTTTCGG 
CGCAACCTCG CGAAGCTCGG CATCGAAGCG CGCTTTCGCA CGGCCGATTA CGCGCTGCTG 
CAAAAGCGGC TCGACGCGTT CGACTACGAC ATGACGACGG TCCGCCTGCC GGGCGTGCAG 
GTGCCGGGTG CCGAGCAGTT CTCGCGCTAC GGCAGCAAGT TCGCCGACGA GCCGGGCTCG 
GACAACCTCA TCGGCCTGAA GTCGCCGGCC GTCGACGCGC TGCTGCATGC ACTCGGCACC 
GCGCAGACGC GCGACGAGCT GCTCGACGCG ACCCACGCGC TCGACCGCGT GCTGATGCAC 
GGCTATTACG CGGTGCCTCA GTGGTACAGC ACGACGCACC GGATCGCCTA CAAGCGCACG 
CTCGGCTATC CGCAAACGCT GCCGCTGTAC TATTCGGCCG AGGGCTGGGT CGTGTCGACC 
TGGTGGGCCA AGCCCGGCCA GTGA 

 

Protein sequence

MTKGSPRTTA ARLRSGAAQA VRAAGRTAAV WTIQAVLAAT AAHAAYAIAQ YGEPKYPPGF 
KHFDYVNPDA PKGGTLVLAN PSRLTSFDKF NPFTMRGNAA PGIDMLFESL TTGSSDEPAS 
AYGLLADDIE IAPDRRSVTF HLNPRARFSN GDPVTADDVR FSFETLKSKQ AAPQFGAYFA 
EIAKAVVIDR ATVRFEFRSP NRELPLIAGG VPVFSRKWGL RADGSRIPFD QLAFEQPIGS 
GPYLIERHDN GRTITYRRNP AYWGADLPVR VGTHNFERIV YKLYGDGVAR LEAFKAGEYD 
VLVEYIARNW ARRDVGKRFD SGELVKREFR QHNGAGMQGF FMNLRRPLFR DVRVRQALDL 
AFDFEWLNRQ LFYGAYTRLD SYFADTDLQA TGTPGPGELK LLEPLRAQLD PAVFGPMVSQ 
PSTNPPGSLR ANLLKARALL AEAGWTYRDG ALRNAQGEPF EFEILDDSGA AMEGIVTAFR 
RNLAKLGIEA RFRTADYALL QKRLDAFDYD MTTVRLPGVQ VPGAEQFSRY GSKFADEPGS 
DNLIGLKSPA VDALLHALGT AQTRDELLDA THALDRVLMH GYYAVPQWYS TTHRIAYKRT 
LGYPQTLPLY YSAEGWVVST WWAKPGQ