| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2090 |
|---|
| Symbol | |
|---|
| ID | 4309386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2294655 |
|---|
| End bp | 2295326 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638149914 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_773980 |
|---|
| Protein GI | 115352141 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0226051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATC GATCCTTGAC CCAGGCATGC GCGCGCACCA TCGCCGGGCT CTTCATCGGC
GCCCTGTTCG CAGCAGCTCC CGGCGCGTTC GCCGACGAAG TCAGCAGTTT TAGCCAGAAT
GCCAGCAATT CGACTCAGAT CGGGTCGGGT TCCTCCCTCC AGCAGACCAG CGCGCAGCCG
TCCAGCGGCG GTGCGAAGTC GTTCCTCGCC GGCATGGCCG GCAAGGCAGG CGACGTGGTC
GTCGGCGCGC TCAACATGAT CGGCGTGCGC TATCGCTGGG GCGGCAACTC GCCGGATTCG
GGCCTCGACT GCAGCGGCTT CGTGCGCTAC GTGTTCCAGG ACACGCTCGG CATGTCGCTG
CCGCGCCGTG CGGAAGAAAT GAGCCGCGTG GGCGAGAAGG TCAGCATGAG CAACCTCAAG
CCGGGCGACC TCGTGTTCTT CAACACGATG CGCCGTACGT TCTCGCACGT CGGCATCTAT
ATCGGCGACA ACAAGTTCGT GCATTCGCCG TCGACGGGCA GCACCATTCG CGTCGACGAT
CTCGACAACG GCTACTGGGA AAAGCGGTTC ACCGGCGCGC GCCGGCTCGA ATCGGAGTTT
CCGATGAAGG CCGACGACCT GCGCCAGCGC GTGCGCGCGA CGATCGGCGA CGACGCGAAC
GGCAGCAACT GA
|
|---|
| Protein sequence | MQHRSLTQAC ARTIAGLFIG ALFAAAPGAF ADEVSSFSQN ASNSTQIGSG SSLQQTSAQP
SSGGAKSFLA GMAGKAGDVV VGALNMIGVR YRWGGNSPDS GLDCSGFVRY VFQDTLGMSL
PRRAEEMSRV GEKVSMSNLK PGDLVFFNTM RRTFSHVGIY IGDNKFVHSP STGSTIRVDD
LDNGYWEKRF TGARRLESEF PMKADDLRQR VRATIGDDAN GSN
|
|---|
| |