| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2007 |
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| Symbol | |
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| ID | 4309049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 2202351 |
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| End bp | 2204801 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638149824 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_773897 |
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| Protein GI | 115352058 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.581672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGC CCGGCCTTGC TCGCCGACTG GCTTCCGTGG
GCCGGCTTGA TCGCGCCGGG CGTGGTGCTG AACAAGGATG GCAGTTTCCA GCGTACAGCG
CGCTTTCGCG GGCCTGATCT GGACAGCGCC ACGCAAGGCG AACTGATCGC CACATCGGCG
CGTCTCAACA ACGCGCTTCG CCGCCTGGGT TCGGGCTGGG CCCTGTTCAT TGAGGCCGAA
CGCCGCCCGG CGGCGGACTA CCCGCATTCC GATTTCCCCG AGCCGCTGTC CTGGCTCGTG
GACGAGGAAC GCCGCGCCGC CTTCGAGGAA TCGGGGCATC ACTTCGAGAG CGGCTATCAC
CTGACGCTGG CGCACCTGCC GCCCGAGGAA TCACGCGCCC GCGCGGCCAA GCTGCTCTAC
GAGAACGCGC CCGGCGATGG CGTGGATTGG CATGGCCGGC TCGATGCCTT CGTGGCGGAA
ACCGATCGTG TTTTCGACTT GCTCGATGGC GTGATGCCGG AGATCGCCCG GCTCGATGAC
GCCCAGACGC TGACCTACCT GCACGCCACG GTGTCCACGC GGCGCTACCG CGTGGGCGTA
CCTGAAGTGC CGTTCCATAT CGACGCGCTG CTGGCCGACT CCGCGCTGGT CGGCGGCCTG
GCGCCCACGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGGGGCTT TCCGACCTCG
ACCTGGCCGG GCCTGCTGGA CGACCTCAAC CGCCTGGGCT TTGCCTATCG CTGGAGCACG
CGCTTTCTCT GCCTGGACAA AGCCGAAGCA GAAAAGGAAC TCGGCCGCCT GCGCCGCCAG
TGGTTTGCCA AGCGCAAGAA CGTCGTCGCG CTGCTGCGCG AAACCATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA CGCGAGCAAC AAGGCGGCCG ACGCGGATGC CGCGATGCAG
GAGCTGGGTG GCGATCAGGT CGCCTTCGGT TACTTCACTG CCACGGTGAC GGTGCTCGAT
GCCGATTCAG CCGCGGCCGA CGAAAAGCTG CGCATGGTGG AGCGCGTCAT CCAGGGCCGG
GGTTTCGTGA CCATCCCCGA GACGTTGAAT GTCGTGGATG CGTGGCTGTC GTCCATCCCC
GGCAATGCCT ACGCGAATGT CCGCCAGCCC ATCGTCTCGA CGCTGAACTT GGCGCACATG
ATGCCGCTGT CTGCGGTGTG GGCCGGGCCG GAGAAGAACG ACCACCTCGA CGGCCCGCCG
CTGATCGTCA CCCGCACCGA TGGTGCGACG CCGTTCCGGC TGGTGACACA CATCGGCGAC
GTCGGCCACA CGCTGGTCGC CGGGCCGACC GGCATGGGCA AGTCGGTGTT GCTTGCCATT
CTGGTGCAGC AATTCCGCCG CTATCGCGGC TCTCGCGTGT TCGCTTTCGA TATGGGCCGC
TCGATGCGCG CCACCATCCT GGGCCTGGGC GGCGAGCACT ACGACCTGGG TGCCGATGGC
GGCATTGCCT TCCAGCCGCT CGCGCGTATC GACCGGGAAA GCTATCGCTC CTGGGCGGGG
GAATGGGTGG AAGGCCGCCT GCTGCATGAG GGCGTGACGG TCGGCCCGGA CGAGAAGGCG
GTCATCTGGT CGGCGCTGGG CAGCTTGACC GGTGCGCCGG TCGAGCAACG CACGTTGACC
GGGTTATCAG TACTGCTGCA ATCGAACGCG CTACGGCAGG CACTCGCGCC TTATGTGCTC
GGTGGCGCGC ACGGCAAGCT ACTGGACGCG GACACCGATC GTCTCGGCTT CGGTGACGTA
CAGGGCTTCG AGATGGAAGA ACTGATGCAC AGCCCCGCCG CCGTGCAAGC GGTGCTGCGC
TACCTGTTCG CCCGCTTCGA TGAGCGTTTC GACGGTGCGC CCACGCTGCT GATTCTGGAT
GAGGCGTGGC TGTTCCTCGA TGAGCCGTCT TTCGCCGCGC GCATTCGCCA ATGGTTGAAG
ACGCTGCGCA AGAAAAACGT GTCGGTGATC TTCGCCACGC AGTCGCTCGC CGATATCAAG
GATTCGAGCA TTGCGCCCGC GATCATCGAG AGCTGCCCGA GTCGGATTTT TCTCCCCAAT
CCGCAGGCCA CCGAGCCGCA GATTCGCACG ATCTACGAGG GCTTCGGCCT CAACAGCCGG
CAAATCGAAA TCGTCGCTAC CGCCCAGCCC AAGCGCGACT ACTACTACCA ATCGCGCCTC
GGCAATCGCC TGTTCGACCT TGATCTGGGT CCAGCCGCAC TCGCCTTCGC GGGTGCATCT
ACTCCGCAAG ACCAACGCGA CATGGATCGC GTGCTGACGC AGGCCGGCGC TCCCGGCTTC
GCCGGTGCGT GGCTGCGCCA TCGCGGCCTC GACTGGGCCT CCGACCTGTT GCCGTCCTCA
CCGGCGGCCG CTTCGTTCCT CAACTCCCAA CCACTGGAGG TTTCGCCATG A
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIATSA
RLNNALRRLG SGWALFIEAE RRPAADYPHS DFPEPLSWLV DEERRAAFEE SGHHFESGYH
LTLAHLPPEE SRARAAKLLY ENAPGDGVDW HGRLDAFVAE TDRVFDLLDG VMPEIARLDD
AQTLTYLHAT VSTRRYRVGV PEVPFHIDAL LADSALVGGL APTLGDQHLR VVSVRGFPTS
TWPGLLDDLN RLGFAYRWST RFLCLDKAEA EKELGRLRRQ WFAKRKNVVA LLRETIFQQE
SPLVDTDASN KAADADAAMQ ELGGDQVAFG YFTATVTVLD ADSAAADEKL RMVERVIQGR
GFVTIPETLN VVDAWLSSIP GNAYANVRQP IVSTLNLAHM MPLSAVWAGP EKNDHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAI LVQQFRRYRG SRVFAFDMGR
SMRATILGLG GEHYDLGADG GIAFQPLARI DRESYRSWAG EWVEGRLLHE GVTVGPDEKA
VIWSALGSLT GAPVEQRTLT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DTDRLGFGDV
QGFEMEELMH SPAAVQAVLR YLFARFDERF DGAPTLLILD EAWLFLDEPS FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCPSRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PAALAFAGAS TPQDQRDMDR VLTQAGAPGF
AGAWLRHRGL DWASDLLPSS PAAASFLNSQ PLEVSP
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