Gene Bamb_2002 details

Gene Information

• Locus tag: Bamb_2002
• ID: 4311768
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 2198164
• End bp: 2200161
• Gene Length: 1998 bp
• Protein Length: 665 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 638149819
• Product: conjugal transfer coupling protein TraG
• Protein accession: YP_773892
• Protein GI: 115352053
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3505] Type IV secretory pathway, VirD4 components

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0417239
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGCTC AGGGCGTGTT GTTCGGGCAG ATCGCGGTTG TTTTCAGCAT CGTGATCGCC 
GGTGTGTGGA GTGCAACGCA ATGGACAGCC GCCGCTCTGG CCTACCAACT ACGCCTTGGC 
TCGCCCTGGT TCGATTTCTT CGGAATGCCG GTCTATCACC CCTGGCGGCT GTTCGAGTGG 
TGGTTCTTCT TCGATGCCTA CGCGCCGCAC GTCTTCGATA TAGGCGGCGC CATTGCGGGC 
GGCAGCGGCC TGGTGGCCGT GGTGGTCGCC ATCGCCATGT CGGTGTGGCG CTCGCGGCAA 
TCGCGCCTGG TCACGACCTA TGGCTCAGCA CGTTGGGCCA ACACCGCCGA CATTCGCAAA 
GCCGGGTTGA TGCAGCCTGC CGGCGTCCTT CTCGGCCTCC ATGACGGACA GTACCTGCGC 
CATGAAGGCC CGGAACACGT CCTGACCTTC GCGCCCACGC GCTCTGGCAA AGGCGTGGGC 
CTGGTGGTGC CGACGCTGCT GTCATGGCCT GCCTCGGCCG TCATCCACGA CATCAAGGGC 
GAGAACTGGC AGATCACCGC CGGCTGGCGT TCGCGCTTCT CGCATTGCCT GCTGTTCAAC 
CCCACCGATG CGAAGTCAGC CGCGTACAAC CCGCTGCTGG AGGTACGGCG AGGCGCTCAT 
GAAGTGCGCG ACGTACAGAA CATCGCGGAC ATCCTTGTCG ATCCCGAAGG GGCGCTGGAG 
AAGCGCAATC ACTGGGAGAA GACCAGCCAT GCGCTGCTGG TCGGCGCCAT CCTGCATGTG 
CTCTACGCCG GCGAAGACAA GACGCTGCGC GGCGTCGCCA ACTTCCTCTC CGATCCTGCG 
TGCCCGTTCG AGCTGACGCT GCATCGGATG ATGACGACGA AGCACCTGGG CGATGCACCG 
CACACGGTTG TCGCGTCCGC CGCGCGTGAA GTGCTCAACA AGTCGGACAA CGAGCGGTCG 
GGCGTGCTCT CGACTGCGAT GAGCTTCTTG GGCTTGTACC GCGACCCCAC GGTGGCCGAG 
GTCACCTCAC GCTGCGACTG GCGCATCGCC GACCTGATCG CGTCCGAGTC ACCCGTGTCG 
CTGTACCTGG TGGTGCCGCC TTCGGACATC AGCCGCACCA AGCCGTTGAT CCGGCTCATC 
TTGAACCAGA TCGGGCGACG CCTCACCGAA TCGCTCGATG GCAGAGACGG CATCGAACGC 
CGCCACAAGC TGTTGCTGAT GCTCGATGAG TTTCCGGCGC TGGGCCGGCT CGACTTCTTC 
GAGACGGCGC TTGCCTTCAT GGCCGGCTAC GGCATCCGCA GCTTCCTCAT CGCACAGTCG 
CTCAACCAGA TCGACAAAGC CTACGGCCAG AACCATTCGA TTCTGGACAA CTGCCATGTC 
CGGGTGACGT TCGCCACGAA CGATGAACGC ACGGCCAAAC GCATTTCAGA GACCTTGGGT 
ACGGCGACCG AACTGCGCGC GCAGCGCAAC TACGCCGGCC ACCGGCTCGC GCCGTGGCTC 
GGGCATCTCA TGGTGTCGCG GCAGGAGACG GCCCGCCCGC TGCTCACCCC TGGCGAAGTG 
ATGCAGCTCC CGCCCGATGA ATCCGTGGTG ATGGTGTCCA GCGTGGCGCC GATCAAGGCC 
AAGAAGCTGC GCTACTACGC CGACACCAAT TTCAAACAGC GGGTACTACC ACCGCCTGCG 
CTTGCGGCCG GGCGGTACGC CGACGTGCCA CCGACCCGCG CCGACGACTG GAGCGGCCTG 
GCGATTCCGG CCGTGCCCGC CGCATCGGCC ACGGCATCCG CCGATGACCT GGGCGGCACC 
GATGACGGCG GTCCGCGCCG CCAACCCGAA CTCTCCGAAT CCGTCGCTTA CGACCCCGAG 
CTGGATCCGC CCGATGACCT GGCGCTGCTC GATGACGACG ACGACTTGCC GCTGCCGCTT 
CCCGGCCAGC TTGACCTGGC CATGCAGCGC ACGGCGCGGC TGGCCTCCCT CGACCCCAAC 
GACGGAATCG ACTTATGA 

 

Protein sequence

MQAQGVLFGQ IAVVFSIVIA GVWSATQWTA AALAYQLRLG SPWFDFFGMP VYHPWRLFEW 
WFFFDAYAPH VFDIGGAIAG GSGLVAVVVA IAMSVWRSRQ SRLVTTYGSA RWANTADIRK 
AGLMQPAGVL LGLHDGQYLR HEGPEHVLTF APTRSGKGVG LVVPTLLSWP ASAVIHDIKG 
ENWQITAGWR SRFSHCLLFN PTDAKSAAYN PLLEVRRGAH EVRDVQNIAD ILVDPEGALE 
KRNHWEKTSH ALLVGAILHV LYAGEDKTLR GVANFLSDPA CPFELTLHRM MTTKHLGDAP 
HTVVASAARE VLNKSDNERS GVLSTAMSFL GLYRDPTVAE VTSRCDWRIA DLIASESPVS 
LYLVVPPSDI SRTKPLIRLI LNQIGRRLTE SLDGRDGIER RHKLLLMLDE FPALGRLDFF 
ETALAFMAGY GIRSFLIAQS LNQIDKAYGQ NHSILDNCHV RVTFATNDER TAKRISETLG 
TATELRAQRN YAGHRLAPWL GHLMVSRQET ARPLLTPGEV MQLPPDESVV MVSSVAPIKA 
KKLRYYADTN FKQRVLPPPA LAAGRYADVP PTRADDWSGL AIPAVPAASA TASADDLGGT 
DDGGPRRQPE LSESVAYDPE LDPPDDLALL DDDDDLPLPL PGQLDLAMQR TARLASLDPN 
DGIDL