| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1942 |
|---|
| Symbol | |
|---|
| ID | 4310180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 2140426 |
|---|
| End bp | 2141355 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638149759 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_773832 |
|---|
| Protein GI | 115351993 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.247873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC AACGCGAGGC GATCGACACG TACCTCTTGC GCGTCTTGCA CACCTTGTTG
ATGGAGCGCA GCGTCACGCG CGCGGCCGTC AAACTGAACC AGTCGCAACC GGCGATCAGT
GCCGCGCTGC GGCGCCTGCG CGACATCACC GGCGACCCGC TCCTCGTGCG CGGCAAGTCC
GGCATGGTCC CGACCGAATA CGGGCTGCGC CTGCTCGAAC CGGTGCAGAA CGCCCTGCGT
GAAATCGAGC GCATCAAGTT CCAGCAGCAC AATTTCGACC CGGCCACGTC GATCCGCTGC
TACCGGATCG GCTGCCCCGA CTACCTGAAC GTGCTGTTCG TGCCGACCGT CGTCGAGCGC
TTCCGCCAGG CCGCGCCGAA TGCGACGCTC GAGTTCCACT CGCTCGGCCC CGCGTTCGAC
TACGAGCTCG CGCTGGAAGA CGGCAAGCTC GACATCGTCG TCGGCAACTG GCCCGAGCCG
CCCGAACAGC TGCATCTGTC GAACCTGTTC GTCGACGAAA TCGTCTGCCT GATGAGCAAC
ACGCATCCGT TCGCGAAGCG CGGCGGGCTC ACGCTCGACC AGTATCTGAA CGCGCCGCAT
CTCGCGCCGA CGCCGTACTC GGTCGGCCAG CGCGGCGCGA TCGACGTGCA CCTCGCGCGC
GAGCGGCTCA AGCGCCACGT GGTCGTCACG CTGCCGTACT TCAACCTCGC ACCGTACGTG
CTGGTGAAGT CCGACCTGAT CTTCACGACG ACGCGCCTGT TCGCCGATCA TTACGCGAAG
TTCCTGCCGC TGTCGGTCGT GCCGGCGCCG CTCGACTTCC CGCCGATGCA GTACTACCAG
CTGTGGCACG AACGCTGTCA CTATTCCGAC GAAGTGCGCT GGCTGCGCAG CCTCGTCGCC
GAAGCGACCC GCACGCTGAT CGAGGCTTGA
|
|---|
| Protein sequence | MSQQREAIDT YLLRVLHTLL MERSVTRAAV KLNQSQPAIS AALRRLRDIT GDPLLVRGKS
GMVPTEYGLR LLEPVQNALR EIERIKFQQH NFDPATSIRC YRIGCPDYLN VLFVPTVVER
FRQAAPNATL EFHSLGPAFD YELALEDGKL DIVVGNWPEP PEQLHLSNLF VDEIVCLMSN
THPFAKRGGL TLDQYLNAPH LAPTPYSVGQ RGAIDVHLAR ERLKRHVVVT LPYFNLAPYV
LVKSDLIFTT TRLFADHYAK FLPLSVVPAP LDFPPMQYYQ LWHERCHYSD EVRWLRSLVA
EATRTLIEA
|
|---|
| |