Gene Bamb_1936 details

Gene Information

• Locus tag: Bamb_1936
• ID: 4310174
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 2135437
• End bp: 2136117
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 638149753
• Product: phage shock protein A, PspA
• Protein accession: YP_773826
• Protein GI: 115351987
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.168224
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCTTT TCGACTCTAT TTCGCGCACG ATCAAAGGCC TGCTGAACGA TGCGGCCGAC 
TCGGTACAGG ATCCGTCGCG CGACGCACGG CAGATCGTGC GGGAGCTCGA CGACAGCATC 
GGCCGTGCCG AGAATTCGCT GATCGAGATC GAGGCACAAG TCGCGACCCA GCGCAGCAAG 
CGCGATGCGG CCGACGACAA GGTGAAGAAG TACGAAGACG GCGCGAAGCG CGCGCTGCAG 
GCCGGCGACG AAGCACTCGC ACGCGAGGCG CTCGCCGCGC AGTCGAACGC GGAAGCCGAG 
CGCGATGCAC TCGCGGCCGA GCTGACCACG CTCGAACCGT CGGTCGACAA GCTGAAGGGG 
CAGATCGCCG ACATGCGCCA GCGCCGCAAC GACCTGAACT CGCGCTCGAA CATCCTGCAG 
GCGAAGCATG AAATCGCGCA GGCAAAGGAC GTCGCGGCAA GCGCGCTCGG CGGCATCGGC 
GGCAAGAACC TGTCCGAGGA TTTCCAGAAG CTCGAGGACA AGGTCGCGCT GCAGAACGCG 
CGCTCGGACG CCCGCCTGAA CTCGGCCGAC ACGTCGAGCG GCAAGGCGCT CGAGGACAAG 
CTCGCCGCGC TGAACAAGGG CCCGTCGGTG GAAGACCGCC TCGCCGCGCT GAAGAAGCAG 
CTCGACACGC CCGCGCAGTA A 

 

Protein sequence

MSLFDSISRT IKGLLNDAAD SVQDPSRDAR QIVRELDDSI GRAENSLIEI EAQVATQRSK 
RDAADDKVKK YEDGAKRALQ AGDEALAREA LAAQSNAEAE RDALAAELTT LEPSVDKLKG 
QIADMRQRRN DLNSRSNILQ AKHEIAQAKD VAASALGGIG GKNLSEDFQK LEDKVALQNA 
RSDARLNSAD TSSGKALEDK LAALNKGPSV EDRLAALKKQ LDTPAQ