| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1932 |
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| Symbol | |
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| ID | 4310936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 2126293 |
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| End bp | 2129850 |
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| Gene Length | 3558 bp |
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| Protein Length | 1185 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638149749 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_773822 |
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| Protein GI | 115351983 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCGA GAAGCGGATT TTATAATAGG TCTTTCGTCT CGACCGGCGC GCCGCGCCGC
GCCGTGCCCG CCACCCCTGC CGTCCCTATG CCAGACAACG CTTCCATCCC GTTCGCCTCG
CCCGTCGCCC GCGTCAAACC GGGCCAGCGG TTCGCCTTCG ACGGCACGCA CGGCTCCGCC
GACGCACTCG CCATCGCCCG CTATCTCGCC GAGAACCGCG CCGCGGTGCC GCTCCTCGCG
GTGATCTGCG CGAACGCGGT CGACGCGCAG CGGCTGTCGC AGGAACTCCG CTACTTCTCG
CCCGATGCGC GCGTGCGCCT GCTGCCGGAC TGGGAAACGC TGCCGTACGA CACGTTCTCG
CCGCACCAGG ATCTCGTCTC CGAGCGGCTC GCGACGCTGC ACGACCTCGG CGAGGGCCGC
TGCGACATCC TGCTGGTGCC CGCGACCACC GCGCTGTACC GGATGCCGCC CGCGTCGTTC
ATGGCCGCGT ACACCTTCGC GTTCGCGCAG GGCGAGCGGC TCGACGAGGC GAAGCTGAAG
GCGCAGCTCA CGCTGGCCGG CTACGAACAC GTGAGCCAGG TCGTGCGGCC CGGCGAATAC
TGCGTGCGCG GCTCGCTGAT CGACCTGTAC CCGATGGGCT CGCCGCTGCC GTACCGGATC
GACCTGTTCG ACGACCAGGT CGACTCGATC CGCGCGTTCG ATCCCGATAC GCAGCGCAGC
CTCTACCCGG TTCGCGAAGT GCGCCTGTTG CCCGGCCGCG AGTTTCCGTT CGACGAAGCC
GCGCGCACGG CCTTTCGCAG CCGCTGGCGC GAGACCTTCG AAGGCGACCC GAGCCGCGCG
CCGATCTACA AGGACATCGG CAACGGCGTG CCGTCGGCCG GCATCGAGTA CTACCTGCCG
CTGTTCTTCG ACGAGACGGC CACGCTGTTC CACTACCTGC CGCAGGACGC GCACCTCGTG
TTCACCGGCG ATCTCGAGGC GTCGATCCGC CGCTTCACGG CCGATACGAA GCAGCGCCAC
GCGTTCCTCT CGCACGACCG CGAGCGGCCG ATCCTCGAGC CGCAGCGCCT GTTCCTGTCC
GACGAGGATT TCTTCGCGTT CGCGAAGCCG TTCGCGCGCG TCGTGCTGCC CGCGCAGCCG
GCCGGCGGCT GGGCGACGGG CCTGCCCGAG CTCACGGTCG ATCGCCATGC CGACGATCCG
CTCGCCGCGT TGCGCACGTT CGTCGAATCG TCGGGCAAGC GCGTGCTGCT GACGGTCGAA
TCGGCCGGCC GCCGCGAAAC GATCCTGCAA CTGCTCGCCG AGCATCACCT GCGCCCCGCG
TCGAACGACC ACTTCGCGGG CTGGCTCGAA AGCGATGCGC CGTTCGCGCT CGGTGTCGCG
CCGCTCGCGA GCGGCTTCGC GGTGCCGGGC GAAGGCTACG CGATCGTCAC CGAAACCGAG
CTGTACGGCG CGCTCGGCCG GCGCGCGGGC CGGCGCCGCC AGGAACAGGC AAGCAACGTC
GACGCGATGG TGCGCGACCT GTCGGAGCTG AAGGTCGGCG ACCCGGTCGT CCATGCGCAG
CACGGCATCG GCCGCTACAT GGGCCTCGTG TCGATGGATC TCGGCGAAGG CGAGACCGAA
TTCCTGCACC TCGAATACGC GGGCGACAGC AAGCTCTACG TGCCGGTCGC CCAATTGCAC
GTGATCTCGC GCTACAGCGG CGCCGATCCC GACAGCGCAC CGCTGCACGC GCTCGGCTCG
GGCCAGTGGG AGCGCGCGAA GCGCAAGGCC GCGCAGCAGA TTCGCGACAC GGCGGCCGAG
CTGCTGAACC TGTACGCGCG CCGCGCGGCC CGCGAAGGCC ATGCGTTCGC GCTCGATCCG
CGCGACTACG TGAAGTTCGC GGAGAGCTTC GGCTTCGAGG AGACGCCCGA CCAGGCCGCG
GCCATCGCGG CCGTGATCGG CGACATGACG AGCGGCAAGC CGATGGACCG CCTCGTGTGC
GGCGACGTCG GCTTCGGCAA GACCGAGGTC GCGCTGCGCG CCGCGTTCAT CGCGGTGATG
GGCGGCAAGC AGGTCGCGCT GCTGTCGCCG ACCACGCTGC TCGCCGAGCA GCACACGCAG
ACCTTCGTCG ACCGCTTCGC GGACTGGCCG GTGCGCATCG TCGAGCTGTC GCGCTTCAAG
ACCACGAAGG AAGTGAATGC GGCGATCGCG CAGATCAACG AAGGCACTGT CGACATCGTG
ATCGGCACGC ACAAGCTGCT GTCGTCGGAC GTGCAGTTCA AGCGCCTCGG CCTCGTGATC
ATCGACGAGG AACACCGCTT CGGCGTGCGC CAGAAGGAAG CGCTGAAGGC GCTGCGCGCG
GAAGTCGACG TGCTGACGCT GACCGCCACG CCGATCCCGC GTACGCTCGG GATGGCGCTC
GAGGGGCTGC GCGACTTCTC GGTGATCGCG ACCGCGCCGC AGAAGCGGCT CGCGATCAAG
ACCTTCGTGC GCCGCGAGGA AGAAAGCGTG ATCCGCGAGG CGATGCTGCG CGAGCTGAAA
CGCGGCGGCC AGGTGTACTT CCTGCACAAC GAGGTCGAGA CGATCGAGAA CCGCAGGGCG
ATGCTCGAGG AACTCGTGCC CGAGGCGCGC ATCGTGATCG CGCACGGCCA GATGCACGAG
CGCGAACTCG AACGCGTGAT GCGCGATTTC GTCGCGCAGC GCGCGAACGT GCTGCTGTGC
ACGACCATCA TCGAGACCGG CATCGACGTG CCGAGCGCGA ACACGATCAT CATGCACCGC
GCGGACAAGT TCGGCCTCGC GCAGCTTCAC CAGCTGCGCG GCCGCGTCGG CCGTTCGCAC
CACCAGGCGT ATGCGTACCT GCTGGTCCAC GATCCGCAGT CGCTGACCAA GCAGGCGCAG
CGCCGGCTCG AGGCGATCCA GCAGATGGAG GAGCTCGGTT CGGGCTTCTA TCTTGCGATG
CACGACCTCG AGATCCGCGG CACCGGCGAG GTGCTCGGCG ACAAGCAGTC GGGCGAGATC
CACGAGATCG GCTTCCAGCT GTATACCGAC ATGCTGAACG ACGCGGTGAA GGCGCTGAAG
AACGGCAAGG AGCCCGACCT CACCGCACCG CTCGCCGCCA CGACGGAAAT CAACCTGCAT
GCGCCCGCGA TCCTGCCGGC CGACTACTGC GCGGACGTGC AGGAGCGGCT GTCGCTGTAC
AAGCGTCTCG CGAACTGCGA GCATGGCGAC GCGATCGACG GCATCCAGGA AGAGCTGATC
GACCGCTTCG GCAAGCTGCC GCCGCAGGCG CACGCGCTCG TCGAGACGCA CCGGCTGCGG
CTGGCCGCGA AGCCGCTCGG CATCGTCAAG ATCGACGCGA GCGAGGCCGC GATCGGGCTG
CAGTTCGAGC CGAACCCGCC GATCGATCCG ATGCGCATCA TCGACATGGT GCAGAAGCAC
CGGCACATCA AGCTCGCGGG CCAGGACAAG CTGCGCATCG AGACGCGCTC GCCCGATCTC
GCGATCCGCG TGTCGACGAT CAAGGAAACG CTGCGCGCGC TGGCGCCGCG CGCCGACGCC
GCGAGCGCGG CCCGCTGA
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| Protein sequence | MKSRSGFYNR SFVSTGAPRR AVPATPAVPM PDNASIPFAS PVARVKPGQR FAFDGTHGSA
DALAIARYLA ENRAAVPLLA VICANAVDAQ RLSQELRYFS PDARVRLLPD WETLPYDTFS
PHQDLVSERL ATLHDLGEGR CDILLVPATT ALYRMPPASF MAAYTFAFAQ GERLDEAKLK
AQLTLAGYEH VSQVVRPGEY CVRGSLIDLY PMGSPLPYRI DLFDDQVDSI RAFDPDTQRS
LYPVREVRLL PGREFPFDEA ARTAFRSRWR ETFEGDPSRA PIYKDIGNGV PSAGIEYYLP
LFFDETATLF HYLPQDAHLV FTGDLEASIR RFTADTKQRH AFLSHDRERP ILEPQRLFLS
DEDFFAFAKP FARVVLPAQP AGGWATGLPE LTVDRHADDP LAALRTFVES SGKRVLLTVE
SAGRRETILQ LLAEHHLRPA SNDHFAGWLE SDAPFALGVA PLASGFAVPG EGYAIVTETE
LYGALGRRAG RRRQEQASNV DAMVRDLSEL KVGDPVVHAQ HGIGRYMGLV SMDLGEGETE
FLHLEYAGDS KLYVPVAQLH VISRYSGADP DSAPLHALGS GQWERAKRKA AQQIRDTAAE
LLNLYARRAA REGHAFALDP RDYVKFAESF GFEETPDQAA AIAAVIGDMT SGKPMDRLVC
GDVGFGKTEV ALRAAFIAVM GGKQVALLSP TTLLAEQHTQ TFVDRFADWP VRIVELSRFK
TTKEVNAAIA QINEGTVDIV IGTHKLLSSD VQFKRLGLVI IDEEHRFGVR QKEALKALRA
EVDVLTLTAT PIPRTLGMAL EGLRDFSVIA TAPQKRLAIK TFVRREEESV IREAMLRELK
RGGQVYFLHN EVETIENRRA MLEELVPEAR IVIAHGQMHE RELERVMRDF VAQRANVLLC
TTIIETGIDV PSANTIIMHR ADKFGLAQLH QLRGRVGRSH HQAYAYLLVH DPQSLTKQAQ
RRLEAIQQME ELGSGFYLAM HDLEIRGTGE VLGDKQSGEI HEIGFQLYTD MLNDAVKALK
NGKEPDLTAP LAATTEINLH APAILPADYC ADVQERLSLY KRLANCEHGD AIDGIQEELI
DRFGKLPPQA HALVETHRLR LAAKPLGIVK IDASEAAIGL QFEPNPPIDP MRIIDMVQKH
RHIKLAGQDK LRIETRSPDL AIRVSTIKET LRALAPRADA ASAAR
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