Gene Bamb_1930 details

Gene Information

• Locus tag: Bamb_1930
• Symbol: ispF
• ID: 4310934
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: -
• Start bp: 2125047
• End bp: 2125532
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 638149747
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_773820
• Protein GI: 115351981
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.322136
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTCA GAATCGGACA AGGCTACGAC GTGCACCAGC TCGTCCCGGG GCGCCCCCTC 
ATCATCGGCG GCGTGACGAT TCCGTACGAG CGCGGGCTGC TCGGCCATTC GGACGCGGAC 
GTGCTGCTGC ACGCGATCAC CGACGCGCTG TTCGGCGCGG CGGCGCTCGG CGACATCGGC 
CGCCATTTCT CCGACACCGA CGCCGCGTTC AAGGGAGCGG ACAGCCGCGT GCTGCTGCGC 
GAGTGCGCCG CCCGCGTGAA GGCGGCCGGC TTCACGATCC AGAACGTCGA CAGCACCGTG 
ATCGCGCAGG CGCCGAAGCT CGCGCCGCAT ATCGACGGGA TGCGCGCGAA CATCGCGGCC 
GATCTCGGGC TGCCGCTCGA TCGCGTGAAC GTGAAGGCGA AGACCAACGA GAAGCTCGGC 
TACCTCGGCC GCGGCGACGG CATCGAGGCG CAGGCGGCCG CGCTGCTGGT GAAAGAGGGC 
GCGTGA 

 

Protein sequence

MDFRIGQGYD VHQLVPGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAL FGAAALGDIG 
RHFSDTDAAF KGADSRVLLR ECAARVKAAG FTIQNVDSTV IAQAPKLAPH IDGMRANIAA 
DLGLPLDRVN VKAKTNEKLG YLGRGDGIEA QAAALLVKEG A