Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1880 |
Symbol | |
ID | 4311593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2059577 |
End bp | 2062084 |
Gene Length | 2508 bp |
Protein Length | 835 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638149694 |
Product | virulence-associated E family protein |
Protein accession | YP_773770 |
Protein GI | 115351931 |
COG category | [R] General function prediction only |
COG ID | [COG5545] Predicted P-loop ATPase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00331522 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGACAC TGGACCAGAT CATTCAGCAA TTGCGTGCGG CGGGGCATCC TGACCTACCC GCCGGCCATC CGGTCGCGGA CGGGAAACAT CATCGGTACG GGCCGCGCAA GAAATACTGG TATCAGCTTC GCGAGGTCGT CAGCAAGGGC TCAGTGATCG GCTATGGCGG TACGTTCGGC CACTTCTCGG GCGACGATCC GGGCACCGAG CGATTCGAGT GGGGCGGCGC ACCGTTGAGC GAAGAAGCGC TCGCGGAAAC GCGTCGCCGG CAAGAGGCTG CCGACCGCGA ACAGGTCGAG CGCGACGCAC GGCAGGCGAA GCTCGCCGCG AACCGTGCAC GCGACCAGTG GAACCGTGCT GCAGAGCATG GCGAGTCCGC CTATCTCGAC CGCAAACACA TCACGGCAGA AGGCGTACGT TTCGACGCGG ACGGCACGAT CTTCGTGCCG ATGTATCAGT ACGGCGACGG CGCCCGTCTC GTCGGCCTGC AAAAGATCAC GCCGGACGGC GCGAAGCGCT TCAACAAGGG CATGGAGAAG AAGGGCGCTT CGTATCTGCT CGGTGAGGTC GGTCCAGATG ACCAGGTCGT GCTGGTCGCC GAAGGCTATG CAACCGCGCG TGCGATCCGC ATGGCGATCG ACGACGCGTT CGCGGTCAAT ATCTGTTTTG ACGCGGGTGG CATCCTTCCG GCCGTGCGCT ACCTGCGTAT GACGTATCCG GATGTGCATG TGCTGGTCTG CGCCGACGAC GACTGGAAGA TCGAGCAGCG CATGCGCGAC TGGCTCGCCG ATGAGTTTGC TTTCCGGGGC GAACTGGTGT TTGGTGCAGA CCCGGTGCGG ATAGAAGCGA AGAACACGTG GTACATGGTT GCCGTGTCAC GCCGTCGTGA CGACAACGGC GTGCCGTATG TCGAGGTCAG CTATGGCAAC GACGTTATGC CGCTGCGTCG CAAGCGCTTC GAGAACACGG GCCTGAAGCG CGCGTATGAG GCGGCAGCGA CAGTCGACGA CGTCAGCGTT ATCTATCCGG TATTCGCTAA TCGCGGCGAG CGCAAGCTGA CCGATTTCAA CGACCTGCAC GTCGAAGAGG GCTTCGAGGC TGTCGAGGCA CAGCTGCAGG CGGCAATCTT GCGCGTCATC GCCCCAGCGA ACGAAGAGAT CCGGCCGGCA ACGGTTGCAG TGTCGACCGC GGACGAGACG CCGACGAAGC CCGCCGCGAC GTCCGCTGCC GCGAAACAGC CGGAATGGGA TGGCCGTGAG GCAGAGAACG GCGCGCACAC GTGGGAGCAG GATCTGGCGC GTTCGGACAA GGGCACGCTG CTGCCGACGC TCGGCAACGT GCACATGATC CTGTCGAACC ACAAGGCATG GCAGGGCGTC ATCGAGCAGG ACGACTTCGG TGGACGCGTG ATGAAGCGCA AGGCGCCGCC GTTCCCGCAA GGCGTGACAG GTGAATGGAC CGACATGGAC GATCAGCGCT GCGCGCTCTG GTTGTCGCAG CGGTACGGCC TCTCGGTGCG TACCGATATC GTGATGAACG CGGTCCTGTT GGTGGCGGAC GCTACACACT TCCATGACGT GCGCGAATAC CTTGAAGGGC TGAAATGGGA CGGCGTACCG CGTGTCCGTT CGATGCCGTC GACATACCTG CGCGTGGCTG ACAGCGAGTA TGTACAGCTC GCGTTCATGA AATGGATGAT CGCGGCCGTC GCTCGCGTGA TGGAGCCGGG CTGCAAGGTG GACAACGTCT TGATCCTCGA AGGCAAGCAG GGGCATCGCA AATCGACAGC GCTGAAGGTG CTGGCCGGCG CTCCGTGGTT CACCGATACG CCGATCCAGA TTGGCAACAA AGACACGTAC GCGGTGCTGG CCGGTAAGTG GGTGATCGAA CTCGCCGAAC TGGACTCGTT GAACAAGGCC GACTCGTCGG CAGTGAAAAG CTTCTTCGCG ACGGCCGTCG ACCGGTTCCG CAACTTCTAC GGTAAGCGTG CGACCGACGT CCCGCGTCAG TGCGTCTTCG CTGGCTCGGT CAACTTCGAT ACGTACCTGA AGGACGAGTC GGGCAACCGA CGCTACTGGC CGCTGCGTGT CGGTGGTCTG GTCGATATCG ACGGCATCGT GGCCGTGCGT GATCAGCTTT GGGCCGAAGC CGTGCACCTG TACCGCACGG GCGTCGTGTG GCACGTGGAA GAGCATGAAC GCCCGCTGTT CGAGATCGAG CAGGCGGAGC GCTACGAAGG CGACGTGTAC GAGGACAAGA TCGCAAAGGC CCTGGAATTC GTGTCGCGCA CGACGATGGA AGAGATCCTC GCGGACATCC TGAAGCTCGA TACGTCGAAG TGGACGCTGG CGGAGCAGCG CCGCATCGGC AAGGCGTTGA AGTCGCTCGG GTGGGTACGC AAGCGCGAGT CGACAGGGTC GCGCGGTTGG TATTACGTGA GCGAGCAGCA AGAGCCGGAA GTGGAACGTG AACTGGTCGC AGCGGGTGAT GACGACAGTC CGCTGTGA
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Protein sequence | MATLDQIIQQ LRAAGHPDLP AGHPVADGKH HRYGPRKKYW YQLREVVSKG SVIGYGGTFG HFSGDDPGTE RFEWGGAPLS EEALAETRRR QEAADREQVE RDARQAKLAA NRARDQWNRA AEHGESAYLD RKHITAEGVR FDADGTIFVP MYQYGDGARL VGLQKITPDG AKRFNKGMEK KGASYLLGEV GPDDQVVLVA EGYATARAIR MAIDDAFAVN ICFDAGGILP AVRYLRMTYP DVHVLVCADD DWKIEQRMRD WLADEFAFRG ELVFGADPVR IEAKNTWYMV AVSRRRDDNG VPYVEVSYGN DVMPLRRKRF ENTGLKRAYE AAATVDDVSV IYPVFANRGE RKLTDFNDLH VEEGFEAVEA QLQAAILRVI APANEEIRPA TVAVSTADET PTKPAATSAA AKQPEWDGRE AENGAHTWEQ DLARSDKGTL LPTLGNVHMI LSNHKAWQGV IEQDDFGGRV MKRKAPPFPQ GVTGEWTDMD DQRCALWLSQ RYGLSVRTDI VMNAVLLVAD ATHFHDVREY LEGLKWDGVP RVRSMPSTYL RVADSEYVQL AFMKWMIAAV ARVMEPGCKV DNVLILEGKQ GHRKSTALKV LAGAPWFTDT PIQIGNKDTY AVLAGKWVIE LAELDSLNKA DSSAVKSFFA TAVDRFRNFY GKRATDVPRQ CVFAGSVNFD TYLKDESGNR RYWPLRVGGL VDIDGIVAVR DQLWAEAVHL YRTGVVWHVE EHERPLFEIE QAERYEGDVY EDKIAKALEF VSRTTMEEIL ADILKLDTSK WTLAEQRRIG KALKSLGWVR KRESTGSRGW YYVSEQQEPE VERELVAAGD DDSPL
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