Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1813 |
Symbol | |
ID | 4309860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 2000871 |
End bp | 2001512 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638149627 |
Product | RNA polymerase sigma factor |
Protein accession | YP_773703 |
Protein GI | 115351864 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.53419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGGCAAG CCGGACAGGC GGTCGACGAG CGGGCAGAGG ATGACGCGAT CGCGCGCGGC GAGCGGTTTC GCGCGCTCGT GCTGCCGCAT CTCGACGCCG CGTACAACCT CGCCCGCTGG CTGAGCGGCA ATCCGGGCGA TGCGGACGAC GTCGTCCAGG ACGCGTGCAT GCGCGCGCTG CGCTTCGTCG ACTCGTGCCG CGGCGACAAC GCCCGGCCGT GGCTGCTGAC GATCGTGCGC CACACCTGGT ACACGGAGTG GCGGCGCCGC ACCCACGCGC ACGAGGTTGC GCTGCCCGAC ACGCTCGACG ACACGGAGGT GCCGGACGAC TGGCAGCCGG CGCCCGGCGA TCCGCTCGCG CAGCTGCTGC GCGGCGAGAA CGTGCGGCTC GTGAACGCGG CGCTCGCGAA GCTGCCGCCC GAATACCGCG AGGTGCTGGT GCTGCGCGAG ATGGAGGATT TGAGCTACCG CGAGATCGCG GCGATCGCCG ACGTGCCGGT GGGCACGGTG ATGTCGCGGC TCTCGCGCGG CCGGCGCCGG CTTGCCGCGC TGCTGGACGG CACGCAGGTG CCGCCGTCCG GCCCCGCGTC GGGGCGTGCG TCGGCGAGCG GAACCGCATC GGAGGCGATC GATGGACTGT AA
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Protein sequence | MGQAGQAVDE RAEDDAIARG ERFRALVLPH LDAAYNLARW LSGNPGDADD VVQDACMRAL RFVDSCRGDN ARPWLLTIVR HTWYTEWRRR THAHEVALPD TLDDTEVPDD WQPAPGDPLA QLLRGENVRL VNAALAKLPP EYREVLVLRE MEDLSYREIA AIADVPVGTV MSRLSRGRRR LAALLDGTQV PPSGPASGRA SASGTASEAI DGL
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