| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1804 |
|---|
| Symbol | |
|---|
| ID | 4309851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1993765 |
|---|
| End bp | 1994829 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638149618 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_773694 |
|---|
| Protein GI | 115351855 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCGAA TCTGGGTTCC CGTCGCCGTC GTTTCACTGC TCGCGGCCTG CTCCAGCGTG
CCGCCGCAGT CGGCATCGCG CACCTCCGGC ATGAAGATCA CGACCCCGCG CGCGTTCCCG
CCGCCCGCCA ATTTCCCGAA ATTCGTCGAT CACAGCGTCG GCCAGGAAGA AATCTCGATC
CAGGCGATGA GCCTCGTCGG CGTGCCGTAT CGCTGGGGCG GCAACACGCC CACGAGCGGC
TTCGACTGCA GCGGGCTCGT GCGCTACGTG ATCGGCCGCG CGGCCGACGT GAACCTGCCG
CGCACGACCG CCGACATGAG CAGCCGCGGC GTGTCGATCG ACCCCGAAGA GGTAGCGCCG
GGCGACCTGA TCTTCTTCAA TACGACCGGA CGCCCGCACT CGCACGTCGG CATCTATGTC
GGCAAGCTGC GCTTCGTCAA TGCGCCGTCG ACCGGCGGCA CCGTGCGGCT CGATTATTTG
ACGAACCCGT ACTGGGCCAA GCGCTTCGAC GGCATTCGCC GTGTCGCGCC GCCGCGCGGC
ACACCGGCAC CGTTCGATAC GCCGACCTAC GAGGCCCGGC GCGACGCGCC GCCGGCCGCA
CCAGCCGCTG TCGTGACCGC CGCCGCGCCA CGGCAGCCCG CCTATGCCGC TGCGCAAGCC
AGCGCGGCCC CAGCTCCCGC TCCGGTCGCG CCAGCCCCGG CGGTCGTATC GACCGCTGCG
GTGGCGCCGG CAGCCGCGCC TGCCGCCGAT CCGTACGAAC CGCCGCCGTC GCGCATGCAG
GCCGCCCGGC AGCAGGCAAG CTCCACGAAC GGCGACATGA TCGCCCCGAC CGCGAATGCA
GCGCCTGCCG GCCCGGCAGA GGTCGGCACG CAGATTCCGA CGACGGCGCT GACCGCCGCC
CAGGCGGCCG CGTTCGACGA CGAACCGCCG CCCGCCGCCG CGCCGTCGCC GCGCGCCATC
GAGCCCGCGC AGGTGTGGCG TGCGTCGACG CAATCCGCGC CCGTCAGCGC GCGCACCGGC
ACCGCGGACG ATCCGATCGC CCGCTTCGCG AACGGCAGTT ACTGA
|
|---|
| Protein sequence | MLRIWVPVAV VSLLAACSSV PPQSASRTSG MKITTPRAFP PPANFPKFVD HSVGQEEISI
QAMSLVGVPY RWGGNTPTSG FDCSGLVRYV IGRAADVNLP RTTADMSSRG VSIDPEEVAP
GDLIFFNTTG RPHSHVGIYV GKLRFVNAPS TGGTVRLDYL TNPYWAKRFD GIRRVAPPRG
TPAPFDTPTY EARRDAPPAA PAAVVTAAAP RQPAYAAAQA SAAPAPAPVA PAPAVVSTAA
VAPAAAPAAD PYEPPPSRMQ AARQQASSTN GDMIAPTANA APAGPAEVGT QIPTTALTAA
QAAAFDDEPP PAAAPSPRAI EPAQVWRAST QSAPVSARTG TADDPIARFA NGSY
|
|---|
| |