| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1767 |
|---|
| Symbol | rho |
|---|
| ID | 4311105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1953847 |
|---|
| End bp | 1955109 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638149581 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_773657 |
|---|
| Protein GI | 115351818 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.548344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATTTAT CCGAGCTCAA GTCTCTGCAC GTGTCCGAAC TGATCGAAAT GGCCAATGGC
CTGGAGATCG AAAACGCGAA CCGCCTGCGC AAGCAGGAGC TGATGTTCGC CATTCTCAAA
AAGCGCGCCA AGACGGGAGA GACGATCTTC GGCGACGGCA CGCTCGAAGT ACTCCCGGAC
GGCTTCGGCT TCCTGCGCTC GCCGGAAATG TCGTACCTCG CAAGTACCGA CGACATCTAT
ATCAGCCCGT CGCAGATTCG CCGCTTCAAT CTGCACACCG GCGACACGAT CGAAGGTGAA
GTCCGCACGC CGAAGGACGG CGAGCGCTAC TTCGCGCTGG TGAAGGTCGA CAAAGTCAAC
GGGCAGCCGC CCGAGGCCTC GAAACACAAG ATCATGTTCG AGAACCTCAC GCCGCTGCAC
CCGAACAAGC CGCTGGCGCT CGAACGCGAG ATGCGCGGCG AAGAGAACGT CACGGGCCGC
ATCATCGACA TGATCGCGCC GATCGGCAAG GGCCAGCGCG GCCTGCTCGT CGCGTCGCCG
AAGTCGGGCA AGACCGTGAT GCTCCAGCAC ATCGCACACG CGATCAAGCA GAACCACCCG
GACGTCGTCC TGTTCGTGCT GCTGATCGAC GAGCGCCCCG AAGAAGTGAC CGAAATGCAG
CGCTCGGTCG CCGGCGAAGT GATCGCATCG ACGTTCGACG AACCGGCCAC GCGTCACGTG
CAGGTCGCCG AAATGGTGAT CGAGAAGGCC AAGCGCCTCG TCGAAATGAA GCACGACGTC
GTGATTCTGC TCGACTCGAT CACGCGTCTC GCACGCGCTT ACAACACCGT GATCCCGGCG
TCGGGCAAGG TGCTGACGGG CGGTGTCGAC GCGAACGCAC TGCAGCGTCC GAAGCGCTTC
TTCGGCGCGG CGCGCAACAT CGAGGAAGGC GGCTCGCTGA CGATCATCGG CACCGCGCTG
ATCGAAACCG GTAGCCGCAT GGATGACGTG ATCTACGAAG AGTTCAAGGG CACCGGCAAC
ATGGAAGTGC ACCTCGAGCG CCGCCTCGCG GAAAAGCGCG TCTATCCTTC GATCAACCTG
AACAAGTCGG GCACGCGTCG CGAAGAAATG CTGATCAAGC CCGAGATCCT TCAAAAGATC
TGGGTGCTGC GCAAGTTCAT CCACGACATG GACGAAGTCG AGGCCATGGA ATTCCTGCTC
GACAAGATCC GTCAGACGAA GAGCAACTCC GAGTTCTTCG ACCTGATGCG CCGCGGCGGC
TGA
|
|---|
| Protein sequence | MHLSELKSLH VSELIEMANG LEIENANRLR KQELMFAILK KRAKTGETIF GDGTLEVLPD
GFGFLRSPEM SYLASTDDIY ISPSQIRRFN LHTGDTIEGE VRTPKDGERY FALVKVDKVN
GQPPEASKHK IMFENLTPLH PNKPLALERE MRGEENVTGR IIDMIAPIGK GQRGLLVASP
KSGKTVMLQH IAHAIKQNHP DVVLFVLLID ERPEEVTEMQ RSVAGEVIAS TFDEPATRHV
QVAEMVIEKA KRLVEMKHDV VILLDSITRL ARAYNTVIPA SGKVLTGGVD ANALQRPKRF
FGAARNIEEG GSLTIIGTAL IETGSRMDDV IYEEFKGTGN MEVHLERRLA EKRVYPSINL
NKSGTRREEM LIKPEILQKI WVLRKFIHDM DEVEAMEFLL DKIRQTKSNS EFFDLMRRGG
|
|---|
| |