Gene Bamb_1729 details

Gene Information

• Locus tag: Bamb_1729
• ID: 4309811
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: -
• Start bp: 1909797
• End bp: 1911671
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 638149543
• Product: poly(R)-hydroxyalkanoic acid synthase, class I
• Protein accession: YP_773619
• Protein GI: 115351780
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG3243] Poly(3-hydroxyalkanoate) synthetase
• TIGRFAM ID: [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0472786
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGCAT CGAAAAATTC GTCGACGTCC GCTCAGGCGG GCACTTCCGC AGGCAGCGCC 
GGATTCGGCC AGGCGGTCCA GCCGATGCAG CAGATGTTCG AAGCATGGCT GAATGCCTGG 
CGTGGTTTCG CCGATCCGGC ACGGGCCGCC ACGGCCGCGA CCACCGCGAA CCCGTTCGCC 
GCATTCCAGT TCCCGACATC GCTTCCGTTC CAGATGCCGT CGATGCCCGA TCTGAGCAGC 
TTCGGCGGCA TGGCGTCTCC GTTTGCGGGG CTGAAGCTGC CGGCAGCCGC GATCTCGCCC 
GAACGGCTCC AGAAGTTGCA GGCCGACTAT GCGCGCGACT GCGTGACGCT GATGCAGCAG 
GCGGCCGCCG CGAAGCTCGA GTCGCCCGAA CTGAAGGACC GCCGCTTCAG CTCGGATGCG 
TGGAAGGCCT CGCCCGCGCA TGCGTTCGCG GCGGCGTGGT ATCTGCTCAA CGCGCGCTAC 
CTGCAGGAAC TGGCCGACGC GCTCGAGACC GATCCGAAGA CGCGCGAACG CATTCGTTTC 
TCCGTCCAGC AATGGACGGC CGCCGCCGCG CCGAGCAACT TCCTCGCGCT CAATCCCGAT 
GCCCAGAAGT CGATCCTCGA GACGCAGGGC GAAAGCCTGC GGCAGGGGAT GATGAACCTG 
CTCGGCGACA TGCAGCGCGG CAAGATTTCG CAGACCGACG AATCGCAATT CGTGGTCGGC 
AAGAACCTCG GGTGCACCGA AGGCGCGGTC GTCTACGAGA ACGACCTGAT CCAGCTGATC 
CAGTACTCGC CGAAGACGGA CAAGGTGTTC GAGCGGCCGC TGCTGATCGT GCCGCCGTGC 
ATCAACAAGT TCTACATCCT CGACCTGCAG CCCGAGAATT CGCTCGTCGC GCATGCGCTG 
TCGAGCGGCC ATCAGGTGTT CCTCGTGTCG TGGCGCAACG CCGATGCATC GGTCGCGCAC 
AAGACGTGGG ACGACTACAT GAACGAAGGG CTGCTCGCCG CGATCGACGC GGTGCAGCAG 
GTCAGCGGCC GCGAGCAGAT CAACACGCTC GGCTTCTGCG TCGGCGGCAC GATGCTCGCG 
ACCGCGCTGG CGGTGCTCGC CGCGCGCGGC GAACATCCGG CCGCGTCGAT GACGCTGCTG 
ACCGCGATGC TCGACTTCAC CGACACCGGC ATCCTCGACG TGTTCGTCGA CGAGGCGCAC 
GTGCAGATGC GCGAGCAGAC CATCGGCGGC AAGAACGGCA CGGCGCCGGG GCTGATGCGC 
GGCGTCGAGT TCGCGAACAC GTTCTCGTTC CTGCGGCCGA ACGACCTCGT GTGGAACTAC 
GTCGTCGACA ACTATCTGAA GGGCCGCACG CCCGCGCCGT TCGACCTGCT GTACTGGAAC 
AGCGACTCGA CGAGCCTGCC CGGTCCGATG TACGCGTGGT ACCTGCGCAA TACCTATCTC 
GAGAACAAGC TCCGCGTGCC GGGCGCGCTG ACCGTGTGCG GCGAATCCGT CGACCTGTCG 
CGCATCGACG TGCCGACCTT CATCTACGGG TCGCGCGAGG ATCACATCGT GCCGTGGCAG 
ACGGCCTACG CGTCGACGTC GATCCTGACG GGCCCGCTGA AGTTCGTGCT GGGCGCGTCG 
GGTCACATCG CGGGCGTGAT CAATCCGCCG GCGAAGAAGA AGCGCAGCTT CTGGGTCAAC 
GAAGGCGACC TGCCCGAATC CGCGGACGAC TGGCTTGCCG GCGCGACCGA GCAGCCGGGC 
AGTTGGTGGA CGACCTGGGT CGAATGGCTC GATCAGTACG GCGGCCGCAA GGTGGCGCCG 
CCTGCCCAGC CCGGTTCCGC GCAGTTCCCG GTGATCGAGC CGGCGCCGGG CCGTTACGTG 
TTGCAGCGCG ATTGA 

 

Protein sequence

MTASKNSSTS AQAGTSAGSA GFGQAVQPMQ QMFEAWLNAW RGFADPARAA TAATTANPFA 
AFQFPTSLPF QMPSMPDLSS FGGMASPFAG LKLPAAAISP ERLQKLQADY ARDCVTLMQQ 
AAAAKLESPE LKDRRFSSDA WKASPAHAFA AAWYLLNARY LQELADALET DPKTRERIRF 
SVQQWTAAAA PSNFLALNPD AQKSILETQG ESLRQGMMNL LGDMQRGKIS QTDESQFVVG 
KNLGCTEGAV VYENDLIQLI QYSPKTDKVF ERPLLIVPPC INKFYILDLQ PENSLVAHAL 
SSGHQVFLVS WRNADASVAH KTWDDYMNEG LLAAIDAVQQ VSGREQINTL GFCVGGTMLA 
TALAVLAARG EHPAASMTLL TAMLDFTDTG ILDVFVDEAH VQMREQTIGG KNGTAPGLMR 
GVEFANTFSF LRPNDLVWNY VVDNYLKGRT PAPFDLLYWN SDSTSLPGPM YAWYLRNTYL 
ENKLRVPGAL TVCGESVDLS RIDVPTFIYG SREDHIVPWQ TAYASTSILT GPLKFVLGAS 
GHIAGVINPP AKKKRSFWVN EGDLPESADD WLAGATEQPG SWWTTWVEWL DQYGGRKVAP 
PAQPGSAQFP VIEPAPGRYV LQRD