| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1513 |
|---|
| Symbol | |
|---|
| ID | 4311773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1659911 |
|---|
| End bp | 1661215 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638149329 |
|---|
| Product | major facilitator superfamily metabolite/H(+) symporter |
|---|
| Protein accession | YP_773405 |
|---|
| Protein GI | 115351566 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCC AGACCGACCA AGCTGCGCTG TCCGCGCATG ACACCCGGCG GCGCGTGTTC
GCCATCGTCG GCGCCTCATC GGGCAACCTC GTCGAGTGGT TCGACTTCTA CATTTACTCG
TTCTGCGCGC TGTACTTCGC GCCGGCGTTC TTCCCGAGCG GCAACTCGAC GACGCAGTTG
CTGAACACGG CCGGCGTGTT CGCGGCCGGT TTCCTGATGC GTCCGATCGG CGGCTGGCTG
TTCGGCCGCA TCGCCGACCG TCACGGCCGC CGCGCGGCGA TGATGATCTC GGTGCTGATG
ATGTGCGGCG GCTCGCTCGT GATCGCGGTC CTGCCGACCT ATGCGCAGAT CGGCGCGCTC
GCGCCGGCGC TGCTGCTGGT CGCGCGTCTG TTCCAGGGGC TGTCGGTGGG CGGCGAATAC
GGGACGAGCG CGACCTACAT GAGCGAGGTC GCGCTGAAGG GGCGGCGCGG CTTCTTCGCG
TCGTTCCAGT ACGTGACGCT GATCGGCGGC CAGCTGTGTG CGCTGCTGGT GCTCGTGATC
CTGCAGCAGA CGCTGTCGAC TGACGAACTG AAGGCGTGGG GCTGGCGCAT TCCGTTCGTC
TGCGGCGCGG CGGCCGCGCT GATCTCGCTG TACCTGCGCA AATCGCTCGA CGAGACGTCG
ACGAGCGCAT CGCGCGACAA GAAGGACGCG GGCACGATCC GCGGCGTGTG GCAGCACAAG
GGCGCATTCT TCACGGTGGT CGGCTTCACG GCCGGCGGCT CGCTGATCTT CTATACGTTC
ACGACGTACA TGCAGAAGTA CTTGGTGAAC ACGGCCGGCA TGCATGCGAA GACGGCCAGC
AACGTGATGA CCGTCGCGCT CCTCGTCTAC ATGCTGATAC AGCCGGTGTT CGGCGCGCTG
TCCGACAAGA TCGGCCGCCG CACGTCGATG ATCCTGTTCG GCACGTTCGC GGTGATCGGC
ACGGTGCCGC TGATGCACAC GCTGAAGACC GTGACGAGCC CGATGGCCGC GTTCGTGCTG
ATCACGATCG CGCTGGCGAT CGTCAGCTTC TACACGTCGA TCAGCGGCCT CATCAAGGCC
GAGATGTTCC CGCCCGAAGT GCGCGCGATG GGCGTCGGCC TGTCGTATGC GGTCGCGAAC
GCGATCTTCG GCGGCTCGGC CGAATACGTC GCGCTGTGGT TCAAGTCGGT CGGCAGCGAG
GAAACCTTCT ACTGGTACGT GACGGCGCTG TGCGCGGTGT CGCTGATCGT GTCGTGGCGG
ATGCGCGACC CGAGCAAGGA AGGGTATCTG CGTCACGAGC CGTGA
|
|---|
| Protein sequence | MDVQTDQAAL SAHDTRRRVF AIVGASSGNL VEWFDFYIYS FCALYFAPAF FPSGNSTTQL
LNTAGVFAAG FLMRPIGGWL FGRIADRHGR RAAMMISVLM MCGGSLVIAV LPTYAQIGAL
APALLLVARL FQGLSVGGEY GTSATYMSEV ALKGRRGFFA SFQYVTLIGG QLCALLVLVI
LQQTLSTDEL KAWGWRIPFV CGAAAALISL YLRKSLDETS TSASRDKKDA GTIRGVWQHK
GAFFTVVGFT AGGSLIFYTF TTYMQKYLVN TAGMHAKTAS NVMTVALLVY MLIQPVFGAL
SDKIGRRTSM ILFGTFAVIG TVPLMHTLKT VTSPMAAFVL ITIALAIVSF YTSISGLIKA
EMFPPEVRAM GVGLSYAVAN AIFGGSAEYV ALWFKSVGSE ETFYWYVTAL CAVSLIVSWR
MRDPSKEGYL RHEP
|
|---|
| |