Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1447 |
Symbol | |
ID | 4309898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 1595979 |
End bp | 1598432 |
Gene Length | 2454 bp |
Protein Length | 817 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638149261 |
Product | ribonuclease R |
Protein accession | YP_773339 |
Protein GI | 115351500 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCAAAT ATCCGTACCC CATTCCGAGC CGTGAAGAAA TTCTCGGCGT GCTGCGTACG AGCGACGCGC CGCTGGCCGC CAACGACATC GCCGAAGCGC TGTCGATCAA GCGCCAGGAA CGCGAGGGGT TCTTCCGGCG TGTCGCCGCA ATGGAACGCG ACGGCCAGAT CCGCCTCGAC AAGCGCGGCC ACTACCAGCT CACTCATCCG TCGAACTTCG TTGCCGGTCG CGTGCAAGGG CATCGCGACG GCTACGGCTT CGTGATCCGC GACGACGGCC AGGACGACCT GTTCTTGCCG AACGGCGAGA TGCAGAAGGT GATGCACAAC GACCGCGTGC TCGCGCGGAT CGTCGGCTAC GATCGCCGCG GCCGGCCGGA AGGCCATGTG GTCGAGGTCA CCGAGCGCGC GAACAAGCGC GTGATCGGCC GCCTGCTCAA CGAGAACGGC GCGCTGATCG TCGCGCCCGA AGACAAGCGC ATCGGCCACG ACATCCTGAT CACGCAGAAC GTGAAGAAGG CGAAGGTCGG GCAGGTCGTC GTCGTCGAAC TGACCGACTT CCCGAGCCGC CATTCGCAAC CGCTCGGCCG CGTCGTCGAA GTGCTCGGCG ACATCGACGA TCCGGGCATG GAAATCGAGA TCGCCGTGCG CAAGTACGGC GTGCCGCACG AATTCGGCCA GCGGGCGCTC GACGATGCCG CCGCGCTGCC GGACGCGGTA CGTCCGGCCG ACCTGCGCTT CCGCGTCGAT TTGCGCGACG TGCCGCTCGT GACGATCGAC GGCGAGGACG CCCGCGACTT CGACGATGCC GTCTACTGCG AACCGACCAA GGTCGGTCGC GGCGACGGTT ACCGCCTGAT CGTCGCGATC GCCGACGTGT CGCACTACGT GCAGCCGGGC AGCGGCCTCG ATGCCGACGC GCTGGAGCGC AGCACGTCGG TCTATTTCCC GCGCCGCGTG ATCCCGATGC TGCCGGAGAA GCTGTCGAAC GGGCTGTGCT CGCTGAATCC GCAGGTCGAC CGCTGCGTGC TCGTGTGCGA CATGGTGATT ACCGCGCGCG GCGAGATCAA GGCGTACCAG TTCTATCCGG CGGTCATCCA TTCGGCCGCG CGCCTGACGT ACACCGAAGT CGCGGCCGTG CTGTCGAACA CGAAGGGGCC GGAGGCCGCG CGCCGCGCGG ACCTGCTGCC GCACCTGCAG GATCTGTACG GCGTCTACAA GTCGCTGTTC GCTGCACGCC AGAAGCGCGG CGCGATTGAT TTCGACACGA CCGAGACGTA CATCGTCTGC AACTCGCAGG GCAAGATCGA ACAGATCGTG CCGCGTCAGC GCAACGATGC GCACAAGCTG ATCGAGGAAT GCATGCTGGC CGCGAACGTC TGCGCGGCCG ACTTCCTGAA GCGCAACAAG CATGCGGGCC TGTACCGCGT GCACGCGGGG CCGACGCCGG AAAAGCTCGA GAACCTGCGC GCGTTCCTGC GCGGCATGGG CCTGTCGCTC GGCGGCGGCG AGAAGCCGCA TGCGAGCGAC TATGCGGCGC TGATGGCGCA GATTCGCGAC CGGCCCGACG CGCAGATGCT GCAGCCGATG CTGCTGCGCT CGATGCAGCA GGCCGTCTAC AGCCCGGACA ACATCGGCCA CTTCGGTCTC GCGTATGAGG CGTACGCGCA CTTCACGAGC CCGATCCGCC GCTATCCCGA CCTGCTCACG CACCGCGCGA TCTACGCGAT CCTGTCGGGC AAGAAGTACA CGCCGAAGGC GCCGGACGGC TTCGAGCTGA ACACCGCGCT GTCGCCGCGC GCCCGCGCGA TGCAGCAGGC CGACGACGAA GCGCGCGGCC GGTCGCGCGT GAACACCGCG ATCTGGGAAG AACTCGGCCT GCATTGCTCG GCGAACGAGC GGCGTGCCGA CGAAGCGTCG CGCGACGTCG AGGCCTGGCT CAAGTGCTAC TTCATGCGCG ACAAGCTCGG CGAGGAATAC GGCGGGATGG TGAACGGCGT CACGTCGTTC GGCATCTTCG TGCAACTCGA CACGCTGTTC ATCGAAGGGC TCGTGCACGT CACGGAACTC GGCTCGGACT ACTTCCAGTA CGACGAGATC AAGAACGAGC TGCGCGGCGA GCGCACGGGC ATCCGTTATC GCCTGTCGGA TCGCGTGCGC GTGCAGGTGA GCCGCGTCGA TCTCGATGCG CGCAAGATCG ACTTCCGCCT GGTGCGCGAC ACGCCGGTGA AGGCGCCGCG TCCCGCACCG GCGCCGGTTG CTGTCGGCAA CGGTAACGAT CGCGGCGGCC CGCGCGTGCG CTCGTTGCCG CCGGCGGAAG ACGCCGCGCC GCGCCGCAAG CGGACGGCCA GCGCACCGAC CGCCGCGGTG AACGACACGC GTGCGGCGAA GAAGAAGGGC GGCGCGCCGG CGAAGACGGC CGCGAAGAAG ACACACGCCC GCAAGAAGTA TTGA
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Protein sequence | MSKYPYPIPS REEILGVLRT SDAPLAANDI AEALSIKRQE REGFFRRVAA MERDGQIRLD KRGHYQLTHP SNFVAGRVQG HRDGYGFVIR DDGQDDLFLP NGEMQKVMHN DRVLARIVGY DRRGRPEGHV VEVTERANKR VIGRLLNENG ALIVAPEDKR IGHDILITQN VKKAKVGQVV VVELTDFPSR HSQPLGRVVE VLGDIDDPGM EIEIAVRKYG VPHEFGQRAL DDAAALPDAV RPADLRFRVD LRDVPLVTID GEDARDFDDA VYCEPTKVGR GDGYRLIVAI ADVSHYVQPG SGLDADALER STSVYFPRRV IPMLPEKLSN GLCSLNPQVD RCVLVCDMVI TARGEIKAYQ FYPAVIHSAA RLTYTEVAAV LSNTKGPEAA RRADLLPHLQ DLYGVYKSLF AARQKRGAID FDTTETYIVC NSQGKIEQIV PRQRNDAHKL IEECMLAANV CAADFLKRNK HAGLYRVHAG PTPEKLENLR AFLRGMGLSL GGGEKPHASD YAALMAQIRD RPDAQMLQPM LLRSMQQAVY SPDNIGHFGL AYEAYAHFTS PIRRYPDLLT HRAIYAILSG KKYTPKAPDG FELNTALSPR ARAMQQADDE ARGRSRVNTA IWEELGLHCS ANERRADEAS RDVEAWLKCY FMRDKLGEEY GGMVNGVTSF GIFVQLDTLF IEGLVHVTEL GSDYFQYDEI KNELRGERTG IRYRLSDRVR VQVSRVDLDA RKIDFRLVRD TPVKAPRPAP APVAVGNGND RGGPRVRSLP PAEDAAPRRK RTASAPTAAV NDTRAAKKKG GAPAKTAAKK THARKKY
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