| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1438 |
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| Symbol | |
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| ID | 4311538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1588332 |
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| End bp | 1590770 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638149251 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_773330 |
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| Protein GI | 115351491 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.12402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA AAGTCAGTCT GTTGCTCCTG ATCTCGGCGC TCGCGCTGAC AGGATGCGCG
AGTTCCCCGT TCAACGCCGC GCCCGACGCC GCCGCGACGC CCGCCGAACG ACTCGGCACG
CTGCAGCAGC AGCGTGAGGC CGCGCCGGAC GACATCGCGC TCACGACCGC CGTCGAATTC
AGCCGGCACG ATTACGTGCG CGCGGAGCTG AAGGAAGCCG ACCGCCAGAT CGCACAGGGC
AACCATGCGG CCGCGATCGA TCACCTGGAC AACGTGCTGG ACGAGGACCC GGGCAACCTC
AAGGCCAGCC AGGCGCTCGA GCAGGTCAAG CGCCGCCAGC AGATGGCGGT CGACCTCGCG
CGCGCGCAGC GCATCGGCGG CGAACAGCCG CAGGAGGCGC TCGAGATCGC GCGGCGCATT
CTCGCCGAGC AGCCCAACCA CGCGGACGCG AAGCGCCTGC GCGACAGGCT GCTGCGTCAG
TCGCAGGCCA GCCGGGCGGT GCGGCCGCAG TTGTCCGACG CGCTGCGCAA GCCGGTGTCG
CTCAACTTCA AGCAGCAGCC GCTTGCGAAC ATCTTCGACG TGATCTCGCG CGTGTCCGGC
GTGAACTTCG TGTTCGACCG CGACGTCGAC ACCAGCCATG CCGCGACGTT GTTCGCGGAA
CGCACGACCG CCGAGGATGC GATCAACCTG TTGCTGCGCA CCAACCAGCT CGAGAAGAAG
GTGCTCGACC GGCACACGCT GCTCGTCTAC CCGTCGCAGC CCGAAAAGGC ACGCAACTAC
ACGGAGTTCG CGATCCGGAC GTTCTTCCTG TCGCATGCGG ACGCGAAGTC GGTGATGGCC
GCGCTGCGCC AGATGATCAA GCCGAAGGAC GTCTACGTGG ACGAGCGGGT GAATGCGGTC
GTCATGCGCG ACACGCCGGA GACGATCCAG GTCGCGGAGC GCGTCGTGAT GGGCCTCGAC
ATTCCTCAAT CCGAGGTGAC GCTCGACGTG CAGGTGCTCG AGGTCAACAT GAACGACAGC
CTCGATCTCG GCGTCCAGTA TCCGGGCAAG ATCCAGTTCA ACGCGCTCGG CGGCGTGGAG
GGCGGCGCGC TGACGCTCGG CGACCTGCTG CGCCTGAATC GCGACCGCGT CGGCGTATCG
AGCGAATCGG GCGGGCTCGC GCTCGCGATC GACCTGCTGC AGAAACAAGG CAAGACCAAG
ACGCTCGCGA ATCCGAAGAT CCGCGTGCGC AACATGGAGA AGGCCAACAT CAAGATCGGC
GAGCGCGTGC CGATCGTCAC GACCACCAAC GCGAACGGCG TCGTGACCGA ATCGGTCAGC
TACCAGGACG TTGGGCTGAT GCTGAAGGTC GAGCCGCGCA TCAGCCTGAA CGAGGAGGTG
AGCGTCAAGG TGAACATGGA GGTCAGCAGC ATCCTGACGA AGGAAACCAC GAAGACCGGG
CTCGTCGCCT ATTCGCTCGG CACGCGCAAT GCGGAGACGC TGATGACCGC GAAGAACGGC
GAAACGCAGA TCCTTGCCGG CCTCGTCAAG CGTAACGAAA GCGACAGCGT GGCGGGGCTG
CCGGGCGTAT CGGGCTTGCC GGTGCTCGGC AGACTGTTCG GTTCGAACGG CCGCAGCAAC
GAGCGCTCGG AGATCGTGCT GCTCATCACG CCGCATATCG AGCGCAATCT CGACCTGCCG
ATGTCGGCAG TGACGACCTT CCTGTCGGGC ACCGAGTCGC GCGTGACCAC CGAAGCGCTG
ACGCTCGAGT CCGCGCAGGC CGTGCCGGCG CGCCTGCCGT CGTCGGACGG CCCGGATCTG
GACGCGCCGA TCGAGCCGGC GACGCCGGTG GGCCAGCGCG CGGCCGCGGA GCCTGAAACA
GCCGACGCGG CCAAGGCAGA GCCGCAAGCG GGCGTGGCGG CCGGGCAGGA TGAGACGGCG
GCCCCGATGG TCGAGCACGA CAAGCGCGGC GCGGGGATGA TGCGCACGCG TTCGGATGCC
GGGCCGCAGC CGGCCCGGGC AATCAAGATC GCAGAGGCCG AGGCAGCGGG CACCGTCGCG
GCGAACCGCC GTGCGGTGCC GCCGCGAGGG GCGGTGACGC GGGCAGTCGC TTCCGCGGCG
AAGGCGACCG AGTTGCGTGC GGCCATCGCC GCCGCGCGAA TCGAGCTGGA TCGCGCGGGC
GACGTCGACG CGGCGCCGCG CATTGCTCAA CCGGGCGCGA TCGTGCGCGC GGCGGCGCCG
CGGACGGCGG CCGAGGCGAC GGCGGCACGC GCGCCGGCCG CCGCTTCGCA GGCCGCCGCT
TCGCAGGCAC GCGGTGAACG CGGCATCGTC GCCGCCGTCC GCTCGCTGAT CGGCACGCTG
CAGGCGTTCG TCGATCACGT CGTGGGCGAA CGCGAACCGG CGCTGCCGCT GTATGCCGAC
GCGCCGATGC TGCTGTCGCG CGCGCGGGGC TTCGCGTGA
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| Protein sequence | MKRKVSLLLL ISALALTGCA SSPFNAAPDA AATPAERLGT LQQQREAAPD DIALTTAVEF
SRHDYVRAEL KEADRQIAQG NHAAAIDHLD NVLDEDPGNL KASQALEQVK RRQQMAVDLA
RAQRIGGEQP QEALEIARRI LAEQPNHADA KRLRDRLLRQ SQASRAVRPQ LSDALRKPVS
LNFKQQPLAN IFDVISRVSG VNFVFDRDVD TSHAATLFAE RTTAEDAINL LLRTNQLEKK
VLDRHTLLVY PSQPEKARNY TEFAIRTFFL SHADAKSVMA ALRQMIKPKD VYVDERVNAV
VMRDTPETIQ VAERVVMGLD IPQSEVTLDV QVLEVNMNDS LDLGVQYPGK IQFNALGGVE
GGALTLGDLL RLNRDRVGVS SESGGLALAI DLLQKQGKTK TLANPKIRVR NMEKANIKIG
ERVPIVTTTN ANGVVTESVS YQDVGLMLKV EPRISLNEEV SVKVNMEVSS ILTKETTKTG
LVAYSLGTRN AETLMTAKNG ETQILAGLVK RNESDSVAGL PGVSGLPVLG RLFGSNGRSN
ERSEIVLLIT PHIERNLDLP MSAVTTFLSG TESRVTTEAL TLESAQAVPA RLPSSDGPDL
DAPIEPATPV GQRAAAEPET ADAAKAEPQA GVAAGQDETA APMVEHDKRG AGMMRTRSDA
GPQPARAIKI AEAEAAGTVA ANRRAVPPRG AVTRAVASAA KATELRAAIA AARIELDRAG
DVDAAPRIAQ PGAIVRAAAP RTAAEATAAR APAAASQAAA SQARGERGIV AAVRSLIGTL
QAFVDHVVGE REPALPLYAD APMLLSRARG FA
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