| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1425 |
|---|
| Symbol | |
|---|
| ID | 4311525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 1570196 |
|---|
| End bp | 1571749 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638149236 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_773317 |
|---|
| Protein GI | 115351478 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGTT CTGAGTCGTC CCGGCCGCTG CTCGAGATGC GCCGGATCAG CAAGACGTTC
CCGGCCGTGC GCGCGCTCGA CAACGTCAGC CTGACCGTCT ATCCGGGCGA GATCCATTCG
CTGATGGGCG AGAACGGCGC AGGCAAGTCG ACGCTGATGA AGATTCTGTC CGGTGCGTAC
CGCGCCGACG CCGGCGGCGA GATCCTGATC GACGGCGAGC GCATCGACGT CGACGGCCCG
CTCGCCGCGC GCGATGCGGG CGTCGCCGTG ATCTACCAGG AGCTGTGCCT GGCGCCGAAC
CTGACCGTCG CGGAAAACAT CTACGTCGGC CGCGAACTGC GGCGCGGCAA CCGGCGCTGG
GGCACCATCG ACCGCGCGGC GATGGCGCGC GGCTGCGAGG ACGTGCTCGC CCGCCTCGGT
GCGCCGTTCG GTCCGGACAC GCTGGTCGGC ACGCTGTCGA TCGCCGAGCA GCAGCTCGTC
GAGATCGCGC GCGCCGTGCA CACCCGCGCG CGCATCCTCG TGATGGACGA GCCGACGACG
CCGCTGTCGT CGCGCGAGAC CGAGCATCTG TTCGGCCTGA TCCGCCAGCT GCGCGAGGAA
GGTCTCGCGA TCATCTACAT CAGCCACCGG ATGGCGGAAA TCTATGAACT GTCCGATCGC
GTGTCGGTGC TGCGCGACGG CTCGTACGTC GGCACGCTCG AGCGCGAATC GCTGTCGGCC
GAGCGGCTCG TTGCGATGAT GGTGGGCCGC GACATCTCCG GCTTCTACAA GAAGGAACAT
GCGCCGTACG ACCCCGGCCA CCTGCTGCTG TCGGTACGCG ACATCGCCGA CGCCGAGCGC
GTGCGCGGCT GCAGCCTCGA CCTGCATGCC GGCGAGGTGC TCGGCATCGC CGGGCTCGTC
GGCGCGGGCC GCACCGAACT GGCGCGGCTG ATCTTCGGCG CGGAGCCGCG CACGCGCGGC
GACGTGAAGC TCGGCGACCG CGCGTTCGGC GCGCACTCGC CGCGCGACGC GATCGATGCC
GGCCTCGTCT ACCTGACGGA AGACCGCAAG CGCCAGGGTC TGTTCCTCGA CATGAGCGTA
CGCGACAACA TCAATATCTC GGTGTGCAAC CGCGATGCGC GGCTCGGTGC GCTCGATCTC
GCCCGCGGTG CGCAACGCGC ACGCGACGCG ATCGCCTCGC TGTCGATCCG CGTGCCGAAT
GCCAACGTCA ACGTCGGCGC GCTGTCGGGC GGCAACCAGC AGAAAGTGCT GCTGTCGCGC
CTGCTCGAGA CCAAGCCGCG CGTGCTGATT CTCGACGAAC CGACGCGCGG CGTCGACATC
GGCGCGAAAT CCGAGATCTA CCGGATCATC AACGAACTGG CCCGCGCGGG CGTCGGCGTG
ATCGTGATCT CGAGCGAACT GCCGGAAATC ATCGGTGTCG CCGACCGCGT GCTCGTGATG
CGCGAAGGCG AGATCGCCGG CGAACTCGGC GGCCACACGC ACACGCCCAT CACGCAGGAA
GCGATCATCG CGCTCGCGAC CGGTTCGCAG GCCGAACTCG CCGACGCGCA CTGA
|
|---|
| Protein sequence | MSRSESSRPL LEMRRISKTF PAVRALDNVS LTVYPGEIHS LMGENGAGKS TLMKILSGAY
RADAGGEILI DGERIDVDGP LAARDAGVAV IYQELCLAPN LTVAENIYVG RELRRGNRRW
GTIDRAAMAR GCEDVLARLG APFGPDTLVG TLSIAEQQLV EIARAVHTRA RILVMDEPTT
PLSSRETEHL FGLIRQLREE GLAIIYISHR MAEIYELSDR VSVLRDGSYV GTLERESLSA
ERLVAMMVGR DISGFYKKEH APYDPGHLLL SVRDIADAER VRGCSLDLHA GEVLGIAGLV
GAGRTELARL IFGAEPRTRG DVKLGDRAFG AHSPRDAIDA GLVYLTEDRK RQGLFLDMSV
RDNINISVCN RDARLGALDL ARGAQRARDA IASLSIRVPN ANVNVGALSG GNQQKVLLSR
LLETKPRVLI LDEPTRGVDI GAKSEIYRII NELARAGVGV IVISSELPEI IGVADRVLVM
REGEIAGELG GHTHTPITQE AIIALATGSQ AELADAH
|
|---|
| |