| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1406 |
|---|
| Symbol | |
|---|
| ID | 4311506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1549884 |
|---|
| End bp | 1550852 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638149217 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_773298 |
|---|
| Protein GI | 115351459 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAGCG TGCTGGCAAT GGCGCTTCTG CTCGTGGCCG CCGCGCTGAT GCTGTGGCGG
CACGGCGAGA TGAAGCGCGA TCGCGCCGAC GTGCAGCGCT TCATCGACAG CCGGATCGAA
CCCGGCGCGC GAGCGGGCGG TGTGCGTCAG CAGCAAGCCC GGCCGGCGGC GCCCGCCGCG
GCGCGCGCGT CAGCCGGCGT GCCCGCTTCG CAATGGGCAC GCTGGCGTGC CGTCGCGACC
GAGTATTTCG CCAACGTGGC AAGCCGCGCG GGAATCGAGG ACGCGCGCGG CAAGGCGCTG
CTTGCGCTGC TGGCGTTGAC CGGGGCGGCG TTTGCCGCCG GCGATCGGGG CGGCTGGCTC
GGCGGCATCG CCGCGCTCGT CTGCGGCGCC GCGCTGCTCG TGTTCTGGCT GGTGTCGCGC
ATACATCGGC GGCGCCAGAT GATCGTTCGT CAGTTGCCGT CGTTTCTGGA CGGCATCGTG
CGGCTGGTGA CGCTGGGCAA TAGCGTGCCG GCCGCGTTCC AGGCCGCGCT GCAGACCACC
GAGGCGCCAT TGCGCGGCTG CCTGGACCAT GTGTCGAGGA TGCTGCGCAC GGGCGTCGAG
ATCGACCGCG CGATGATGCA TATCGCGAAC GTGTACCACA CGAAGGAGTT CGAACTGGTC
GGGTCGGTGC TGCGGCTGTC GGTGCGGTAC GGCGGTCGCG CGGACATCAT GCTCGACCGG
ATGTCGACGT TCATGCGCGA CCTCGAACAG GCCGAGCGGG AACTGGAGGC GATGTCGTCG
GAAACGCGTT TGTCTGCATG GGTGCTCGTC ATGCTGCCGA TCGCGATCGG CAGCTTCGTC
ATCGCGACCA ATCCGCTCTA CCTCCAGTCG ATGTGGAACG ATTACACCGG TCGCCAGTTG
CTGGTCCTCG CTTTCATGCT GCAGGCAGCG GGCGGGATCT GGCTTTATCA CATGGCCAAA
CTCAGGTGA
|
|---|
| Protein sequence | MYSVLAMALL LVAAALMLWR HGEMKRDRAD VQRFIDSRIE PGARAGGVRQ QQARPAAPAA
ARASAGVPAS QWARWRAVAT EYFANVASRA GIEDARGKAL LALLALTGAA FAAGDRGGWL
GGIAALVCGA ALLVFWLVSR IHRRRQMIVR QLPSFLDGIV RLVTLGNSVP AAFQAALQTT
EAPLRGCLDH VSRMLRTGVE IDRAMMHIAN VYHTKEFELV GSVLRLSVRY GGRADIMLDR
MSTFMRDLEQ AERELEAMSS ETRLSAWVLV MLPIAIGSFV IATNPLYLQS MWNDYTGRQL
LVLAFMLQAA GGIWLYHMAK LR
|
|---|
| |