| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1384 |
|---|
| Symbol | truB |
|---|
| ID | 4309608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1521500 |
|---|
| End bp | 1522432 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638149195 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_773276 |
|---|
| Protein GI | 115351437 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATG CAGCCTCCCA GCGTCCGCGC GTGCCCCGGC GCGCGCTGGA CGGCGTCCTC
CTGCTCGACA AGCCGGTCGG CCTGTCGAGC AACGACGCCC TGATTCGCGC GAAGCGCCTG
CTTCTCGCGA AGAAAGCCGG TCACACCGGC ACGCTCGATC CGCTGGCCTC GGGCCTGTTG
CCGTTGTGCT TCGGCGAGGC GACGAAGTTC TCGCAGGACT TGCTGGAAGC GGACAAGACC
TACGAAGCGA CGATGCGTCT GGGCGTGCGC ACGACCACCG GCGACGCGGA AGGCGACGTG
CTCGACACAC GCGCGGTCGA ATGCGATCGC GCGGCGGTGG AAGCCGCACT CGCACGTTTT
ACCGGCGAGA TCGTGCAGGT GCCGCCGATG TATTCGGCGC TCAAGCGCGA CGGCAAGCCG
CTGTACGAAT ATGCGCGCGC GGGCCAGACG GTCGAACGGG AAGGCCGCAA CGTGACGATT
CTTGCACTCG ACCTGCTGGC CTGCGAGCTG CCGGACGTGA CGTTTCGCGT GACCTGCAGC
AAGGGCACGT ATGTGCGTAC GCTGGCCGAA GATATCGGCG AAGCGCTCGG TTGCGGCGCG
CATCTGACGA TGTTGCGTCG TACGGGTGTC GGCGCGCTGA CGCTCGAGCA TGCGGTGACG
CTCGACGCGC TGTCCGATGC GGACGAAGCG GCGCGCGATG CGTGGCTTCA GCCGGTCGAC
GCGCTGTTGT CGACGTTTCC GCTGGTGCGT CTCGACGAAG CCGGCGCGAA GCGGTTCCTG
CATGGTCAGC GCTTGCCGCT GTCGGCGCTC GATCCGATCG ATGCGGCAGA GGGCGAGCGT
GTGCGCGTGT ACGATGCGGC ACGGCTGCTC GGCGTGGCGC GCAAGGCCAA CGGCGTGCTC
GCACCCGAAC GCCTGGTCGT GACGGCTGCG TGA
|
|---|
| Protein sequence | MTNAASQRPR VPRRALDGVL LLDKPVGLSS NDALIRAKRL LLAKKAGHTG TLDPLASGLL
PLCFGEATKF SQDLLEADKT YEATMRLGVR TTTGDAEGDV LDTRAVECDR AAVEAALARF
TGEIVQVPPM YSALKRDGKP LYEYARAGQT VEREGRNVTI LALDLLACEL PDVTFRVTCS
KGTYVRTLAE DIGEALGCGA HLTMLRRTGV GALTLEHAVT LDALSDADEA ARDAWLQPVD
ALLSTFPLVR LDEAGAKRFL HGQRLPLSAL DPIDAAEGER VRVYDAARLL GVARKANGVL
APERLVVTAA
|
|---|
| |