| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1382 |
|---|
| Symbol | infB |
|---|
| ID | 4309606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1518058 |
|---|
| End bp | 1520973 |
|---|
| Gene Length | 2916 bp |
|---|
| Protein Length | 971 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638149193 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_773274 |
|---|
| Protein GI | 115351435 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.350038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGTA ACAACGTAGC CCAATTTGCC GCGGAACTGA AAATGCCTGC TGGTGTGCTG
CTCGAACAGC TGCAGGCAGC GGGCGTCCAG AAAGCGAGTG AAGACGATGC GCTGTCCGAG
GCGGACAAGG CGCGTCTGCT CGATCATTTG CGCAAGTCGC ACGGCGCAAC CGACGGCGAC
AAGCGCAAGA TCACGCTGAC CCGCAAGCAT ACGTCGGAGA TCAAGCAATC TGACGCGACG
GGCAAGGCTC GCACCATTCA GGTCGAGGTC CGCAAGAAGC GTACGTTCGT CAAGCGCGAC
GACGTGGCCG AAGGTGCGGA ACAGGGTCAG GCGCAAGTCG CCGAAGCGGA CGACGATGCG
GAACTGAAGC GTCGCGAGGA AGAAGCGCGC CGCGAGGCCG AGCTGCTCGA GAAGCAGGCG
CAGGAACTGC GCGAGCGCCA GGAGCGCCTC GAGCGCGAGG AAGCCGAGCG CCGCGCCCGC
GAGGAAGCGG CCGAGGCCCA GCGTCGTCGT GCCGAGGAAG AAGCGGCAGC GAAGCGTGCC
GCGGCCGCAG CCGTAGAGGC ACAGCAGGTT GCCGCCCAGC AGGCCGCCGA GGCTCAGCAG
GAAACGGCCG GTGCGCAGTC CGCGCAGGAC GAAGCACGCG CGGCCGCCGA ACGTGCGGCC
CAGCGCGAAG CGGCGAAGAA GGCCGAGGAC GCTGCACGCG AGGCGGCGGA CAAGACGCGC
GCCGAGCAGG AAGAGATTCG CAAGCGTCGC GAGGCGGCCG AGGCCGAAGC GCGCGCGATC
CGCGAAATGA TGAACACGCC GCGCAAGGCC ATGGTCAAGG CAGTCGAGCC GCCGAAGCCG
GTGGAACCGC CGAAGCCGGT CGAAGCGAAG GGCACGCTGC ACAAGCCGGC AAAGCCGGCG
GGCGCAAGCG CGGCACGTCC GGCCGTGAAG AAGCCGGCCG GCGCAGCGCC GGCGACCACG
GCACCGGCAG GTGCGGGCGA CCGCAACAAG AAGCCGGGTG GCGGCAAGGG CGGCTGGCAG
GACGACGCAG CGAAGCGCCG CGGCATCAAG ACGCGCGGCG ATTCGAGCGG CGGCGTCGAC
CGCGGCTGGC GCGGCGGCCC GAAGGGTCGT GGCCGTCACC AGGACAGCGC ATCGACGTTC
CAGGCACCGA CCGAACCGAT CGTGCGTGAA GTGCACGTGC CGGAAACCGT CTCGGTTGCC
GATCTCGCAC ACAAGATGTC GATCAAGGCC TCGGAAGTCA TCAAGGTGAT GATGAAGATG
GGCCAGATGG TCACGATCAA CCAGGTGCTG GACCAGGAAA CGGCGATGAT CGTCGTCGAG
GAACTGGGCC ACCGCGCGGT TGCCGCGAAG CTGGACGATC CGGAAGCGCT GCTGGTCGAA
GGCGAGACCA CCACCGATGC GGAGCAGCTG CCGCGTCCGC CGGTCGTCAC CGTGATGGGC
CACGTCGACC ACGGCAAGAC CTCGCTGCTC GACCACATCC GCCGCGCGAA GGTTGCAGCG
GGCGAAGCGG GCGGCATTAC GCAGCACATC GGCGCATACC ACGTCGAAAC GCCGCGCGGT
GTCATCACGT TCCTCGATAC GCCGGGTCAC GAAGCGTTCA CGGCAATGCG TGCACGCGGC
GCGAAGGCGA CCGACATCGT GGTGCTGGTG GTGGCTGCCG ACGACGGCGT GATGCCGCAG
ACGAAGGAAG CCATCGCTCA CGCGAAGGCG GGTGGCGTGC CGATCGTCGT GGCGATCAAC
AAGATCGACA AGCCGGAAGC GAACCCGGAC CGCGTCAAGC AGGAACTGGT CGCGGAAGGC
GTCGTGCCGG AAGAATACGG TGGCGATTCG CCGTTCGTGC CGGTGTCGGC CAAGACGGGC
GTCGGTATCG ACGACCTGCT CGAGAACGTG CTGCTGCAGG CCGAAGTGCT GGAACTGAAG
GCACCGATCG AGGCGCCGGC CAAGGGCATC GTGATCGAAG CGAAGCTGGA CAAGGGCAAG
GGCCCGGTCG CGACGATCCT GGTGCAGTCG GGTACGCTGA ACCGCGGCGA CGTCGTGCTC
GCAGGCTCGG CTTATGGCCG CGTGCGTGCG ATGCTCGACG AGAACGGCAA GCCGACGAAG
GAAGCCGGCC CGTCGATCCC GGTCGAAATC CAGGGTCTGT CGGAAGTGCC GGGTGCCGGT
GAGGAAGTCA TCGTACTGCC GGACGAGCGC AAGGCGCGCG AAATCGCGCT GTTCCGCCAG
GGCAAGTTCC GCGACGTCAA GCTGGCGAAG CAGCAGGCCG CGAAGCTGGA AAGCATGCTC
GAGCAGATGG GCGAAGGCGA AGTGCAGAAC CTGCCGCTCA TCATCAAGGC GGACGTGCAG
GGCTCGCAGG AAGCGCTCGT GCAGTCGCTG CTCAAGCTGT CGACCGACGA AGTGCGCGTG
CAGATCGTGC ACAGCGCGGT GGGCGGCATC AGCGAAAACG ACGTCAACCT CGCGACGGCA
TCGAAGGCGG TCATCATCGG CTTCAACACG CGTGCGGATG CACAGGCGCG CAAGCTGGCC
GAATCGAACG GTATCGACAT CCGCTACTAC AACATCATCT ACGACGCAGT GGATGAGGTG
AAGGCCGCGA TGTCGGGCAT GCTGGCGCCG GAGAAGCGCG AGGTCATCAC CGGTATGGTC
GAGGTGCGCC AGGTGTTCAA GGTGCCGAAG ATCGGCACGG TCGCCGGCTG TATGGTCACG
GACGGTATCG TCAAGCGCTC GTCGTCGGTG CGTGTACTGC GCAACAACGT CGTGATCTTC
ACGGGCGAAC TCGAATCGCT GAAGCGCTTC AAGGACGACG TGAAGGAAGT GAAGCAAGGC
TTCGAGTGCG GTATGTCGGT GAAGAACTTC AACGACGTCA CCGAAGGCGA CCAGTTCGAA
GTCTTCGAAG TGACCGAAGT CGCGCGTACG CTGTAA
|
|---|
| Protein sequence | MASNNVAQFA AELKMPAGVL LEQLQAAGVQ KASEDDALSE ADKARLLDHL RKSHGATDGD
KRKITLTRKH TSEIKQSDAT GKARTIQVEV RKKRTFVKRD DVAEGAEQGQ AQVAEADDDA
ELKRREEEAR REAELLEKQA QELRERQERL EREEAERRAR EEAAEAQRRR AEEEAAAKRA
AAAAVEAQQV AAQQAAEAQQ ETAGAQSAQD EARAAAERAA QREAAKKAED AAREAADKTR
AEQEEIRKRR EAAEAEARAI REMMNTPRKA MVKAVEPPKP VEPPKPVEAK GTLHKPAKPA
GASAARPAVK KPAGAAPATT APAGAGDRNK KPGGGKGGWQ DDAAKRRGIK TRGDSSGGVD
RGWRGGPKGR GRHQDSASTF QAPTEPIVRE VHVPETVSVA DLAHKMSIKA SEVIKVMMKM
GQMVTINQVL DQETAMIVVE ELGHRAVAAK LDDPEALLVE GETTTDAEQL PRPPVVTVMG
HVDHGKTSLL DHIRRAKVAA GEAGGITQHI GAYHVETPRG VITFLDTPGH EAFTAMRARG
AKATDIVVLV VAADDGVMPQ TKEAIAHAKA GGVPIVVAIN KIDKPEANPD RVKQELVAEG
VVPEEYGGDS PFVPVSAKTG VGIDDLLENV LLQAEVLELK APIEAPAKGI VIEAKLDKGK
GPVATILVQS GTLNRGDVVL AGSAYGRVRA MLDENGKPTK EAGPSIPVEI QGLSEVPGAG
EEVIVLPDER KAREIALFRQ GKFRDVKLAK QQAAKLESML EQMGEGEVQN LPLIIKADVQ
GSQEALVQSL LKLSTDEVRV QIVHSAVGGI SENDVNLATA SKAVIIGFNT RADAQARKLA
ESNGIDIRYY NIIYDAVDEV KAAMSGMLAP EKREVITGMV EVRQVFKVPK IGTVAGCMVT
DGIVKRSSSV RVLRNNVVIF TGELESLKRF KDDVKEVKQG FECGMSVKNF NDVTEGDQFE
VFEVTEVART L
|
|---|
| |