Gene Bamb_1322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1322 
Symbol 
ID4309031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1452257 
End bp1454779 
Gene Length2523 bp 
Protein Length840 aa 
Translation table11 
GC content68% 
IMG OID638149131 
ProductUvrD/REP helicase 
Protein accessionYP_773214 
Protein GI115351375 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01075] DNA helicase II 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGCAC ATCGGCCAGC CATTGCGGGG TCCGCGCCGG CCCGTCGGGC GGCCCTCACT 
GCGCCGCGGC GGCGCGAGGC CGAACGGATC GGAAACGGCA TCGCGCCGCC GACTTATAAT
GTCGGGTCCG CATTTTTCTC GCACGCCCGC TGCCGCTCCA TGCCCGATCT GCTCGCCAAT
CTGAACCCTG AACAATACGC CGCCGTCACG TTGCCGAACG AACCGGCGCT GATCCTCGCG
GGGGCGGGCA GCGGCAAGAC CCGCGTGCTG ATCACCCGCA TCGCGTGGCT GATCCAGCAA
GGCTACGCGT CGCCGCCCAC CGTGCTGGCC GTCACCTTCA CGAACAAGGC CGCGCGCGAG
ATGATGGCGC GCCTGTCGGC GATGATGCCG ATCGACACGC GCGGAATGTG GATCGGCACG
TTCCACGGGC TGTGCAACCG GATGCTGCGC ACCCACTGGC GCGACGCCGG CCTGCCGCAG
ACCTTCCAGA TCCTCGACAC GGCCGATCAG TTGTCGGCGA TCAAGCGGTT GATGAAGGCG
GCGAACGTCG ACGACGAGAA GTACCCGCCG AAGAATGTCC AGTACTTCAT CAACAACGCG
AAGGAGCAGG GGCTGCGTCC CGACAAGGTC GACGCGACCG ACAACTTCAA CCGCAAGTTC
GTCGAGCTGT ACCAGGCGTA CGACCAGCAG TGCCAGCGCG AGGGCGTGGT CGACTTCCCC
GAGCTGCTGC TGCGCTGCTA CGAGCTGCTC GCGTACAACG CGCCGCTGCG CGCGCACTAC
CAGGCACGCT TCCGGCACAT CCTCGTCGAC GAGTTCCAGG ACACCAACAA GCTGCAGTAC
GCGTGGCTCA AGATGCTCGC GGGCGGCGAG AACGCGATCT TCGCGGTCGG CGACGACGAC
CAGTCGATCT ACGCGTTCCG CGGCGCGAAC GTCGGCAACA TGCGCGACTT CGAAGACGAA
TTCCGCGTGC GCAACCTGAT CAAGCTCGAG CAGAACTACC GGTCGCACGG CAACATCCTC
GACGCGGCGA ACCAGCTGAT CTCGAACAAC GCGCACCGCC TCGGCAAGAA CCTGCGCACC
GACGCCGGCC ACGGTGAGCC CGTGCGCGTG TACGAGGCGA GCACCGATGC GCAGGAAGCC
GGCTGGATCG TCGAGGAGAT CCGCTCGCTG ATCAACACCG GAATGTCGCG CAGCGAAGTC
GCCGTCCTGT ATCGCAGCAA CGCGCAATCG CGCGCGATCG AGCACACGCT GATGACCTCG
GGCATTCCGT ATCGCGTGTA CGGCGGCCTG CGCTTCTTCG AGCGCCAGGA AGTGAAGCAT
GCGCTCGCGT ACCTGCGCCT GATCGACAAC CCGAACGACG ACACCGCGTT CGTGCGCGTC
GTGAACTTCC CGACGCGCGG GATCGGCGCG CGCTCCATCG AGCAGCTCGC GGATGCCGCG
CGCCTGTACG ACTGTTCGAT GGCCGCCGCG ATTCCGTACG TGACCGGCAA GGCCGGCACG
AGCCTCGGCG GGTTCGCGAC GCTGATCGCG AAGATGCGCG CCGAGACGCA GCAGATGAGC
CTGCCCGAGA CGGTCGAGTA CGTCGTGCGC GCGAGCGGCC TCGCCGATTT CTACCAGGGC
GAGCGCGAAG GCCAGGACCG CCTCGAGAAC TTGCAGGAAC TCGTGAACGC GGCCACCGCG
TTCGTCAGCG AGGAAGGCTA CGGGCTCGAC GCGCCGGCCC GCTCGATCCC GCTGCGCGCG
GGGGCGATCG CGGCGCCGGA GCTCGGCGTG GATGCGAACG ATCCGTCGGT CGACGTGCTC
GATCCGGCGC CGCTCGACGA CCCCGCGCAG AACCCCGACA CGATGACGCC GCTCGCGGGC
TTCCTGTCGC ACGCATCGCT CGAAGCCGGC GACAACCAGG CGCAGGCCGG CCAGGACGCC
GTGCAGCTGA TGACGGTGCA CGCGGCGAAG GGCCTCGAAT TCTCGGCCGT GTTCATCACC
GGCCTGGAGG AAGGGCTGTT CCCGCACGAG AACAGCGTGC TCGAATCGGA CGGCCTCGAG
GAAGAGCGCC GGCTGATGTA CGTCGCGATC ACGCGGGCGA AGGAGCGGCT CTACCTGTCG
TTCGCGCAGA GCCGGATGCT GCACGGCCAG ACGCGCTACA ACGTGCGCTC GCGCTTCTTC
GACGAATTGC CGGAGCACGT GCTGAAGTGG CTGACGCCGA AGGTCGAGGC GGGCGCGCGT
TGGGGCGGCC GTTCGGACAA TGCCGGCTGG GGGCGCGACT GGTTCTCGCG GCCGGGCGGC
GGCAGTCGCG AGCAGGTCGT CGACGCGGCG GTTTCCGCGC CGCTGCCGGC GTTCGCGAAC
AAGCAGCGCG CGGCCGACAC CGGCTTTCGC GTCGGCCAGC AGGTATTTCA TACCAAGTTC
GGCGAGGGCA CGGTCACCGC GCTCGAAGGC AACGGCGCCG ATGCGAAGGC GCAGGTGAAG
TTCAAGCGGC ACGGCGAGAA GTGGCTCGCG CTGGCGGTCG CGAAACTGCA GGCGGTGGAA
TGA
 
Protein sequence
MDAHRPAIAG SAPARRAALT APRRREAERI GNGIAPPTYN VGSAFFSHAR CRSMPDLLAN 
LNPEQYAAVT LPNEPALILA GAGSGKTRVL ITRIAWLIQQ GYASPPTVLA VTFTNKAARE
MMARLSAMMP IDTRGMWIGT FHGLCNRMLR THWRDAGLPQ TFQILDTADQ LSAIKRLMKA
ANVDDEKYPP KNVQYFINNA KEQGLRPDKV DATDNFNRKF VELYQAYDQQ CQREGVVDFP
ELLLRCYELL AYNAPLRAHY QARFRHILVD EFQDTNKLQY AWLKMLAGGE NAIFAVGDDD
QSIYAFRGAN VGNMRDFEDE FRVRNLIKLE QNYRSHGNIL DAANQLISNN AHRLGKNLRT
DAGHGEPVRV YEASTDAQEA GWIVEEIRSL INTGMSRSEV AVLYRSNAQS RAIEHTLMTS
GIPYRVYGGL RFFERQEVKH ALAYLRLIDN PNDDTAFVRV VNFPTRGIGA RSIEQLADAA
RLYDCSMAAA IPYVTGKAGT SLGGFATLIA KMRAETQQMS LPETVEYVVR ASGLADFYQG
EREGQDRLEN LQELVNAATA FVSEEGYGLD APARSIPLRA GAIAAPELGV DANDPSVDVL
DPAPLDDPAQ NPDTMTPLAG FLSHASLEAG DNQAQAGQDA VQLMTVHAAK GLEFSAVFIT
GLEEGLFPHE NSVLESDGLE EERRLMYVAI TRAKERLYLS FAQSRMLHGQ TRYNVRSRFF
DELPEHVLKW LTPKVEAGAR WGGRSDNAGW GRDWFSRPGG GSREQVVDAA VSAPLPAFAN
KQRAADTGFR VGQQVFHTKF GEGTVTALEG NGADAKAQVK FKRHGEKWLA LAVAKLQAVE