| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1322 |
|---|
| Symbol | |
|---|
| ID | 4309031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1452257 |
|---|
| End bp | 1454779 |
|---|
| Gene Length | 2523 bp |
|---|
| Protein Length | 840 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638149131 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_773214 |
|---|
| Protein GI | 115351375 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCAC ATCGGCCAGC CATTGCGGGG TCCGCGCCGG CCCGTCGGGC GGCCCTCACT
GCGCCGCGGC GGCGCGAGGC CGAACGGATC GGAAACGGCA TCGCGCCGCC GACTTATAAT
GTCGGGTCCG CATTTTTCTC GCACGCCCGC TGCCGCTCCA TGCCCGATCT GCTCGCCAAT
CTGAACCCTG AACAATACGC CGCCGTCACG TTGCCGAACG AACCGGCGCT GATCCTCGCG
GGGGCGGGCA GCGGCAAGAC CCGCGTGCTG ATCACCCGCA TCGCGTGGCT GATCCAGCAA
GGCTACGCGT CGCCGCCCAC CGTGCTGGCC GTCACCTTCA CGAACAAGGC CGCGCGCGAG
ATGATGGCGC GCCTGTCGGC GATGATGCCG ATCGACACGC GCGGAATGTG GATCGGCACG
TTCCACGGGC TGTGCAACCG GATGCTGCGC ACCCACTGGC GCGACGCCGG CCTGCCGCAG
ACCTTCCAGA TCCTCGACAC GGCCGATCAG TTGTCGGCGA TCAAGCGGTT GATGAAGGCG
GCGAACGTCG ACGACGAGAA GTACCCGCCG AAGAATGTCC AGTACTTCAT CAACAACGCG
AAGGAGCAGG GGCTGCGTCC CGACAAGGTC GACGCGACCG ACAACTTCAA CCGCAAGTTC
GTCGAGCTGT ACCAGGCGTA CGACCAGCAG TGCCAGCGCG AGGGCGTGGT CGACTTCCCC
GAGCTGCTGC TGCGCTGCTA CGAGCTGCTC GCGTACAACG CGCCGCTGCG CGCGCACTAC
CAGGCACGCT TCCGGCACAT CCTCGTCGAC GAGTTCCAGG ACACCAACAA GCTGCAGTAC
GCGTGGCTCA AGATGCTCGC GGGCGGCGAG AACGCGATCT TCGCGGTCGG CGACGACGAC
CAGTCGATCT ACGCGTTCCG CGGCGCGAAC GTCGGCAACA TGCGCGACTT CGAAGACGAA
TTCCGCGTGC GCAACCTGAT CAAGCTCGAG CAGAACTACC GGTCGCACGG CAACATCCTC
GACGCGGCGA ACCAGCTGAT CTCGAACAAC GCGCACCGCC TCGGCAAGAA CCTGCGCACC
GACGCCGGCC ACGGTGAGCC CGTGCGCGTG TACGAGGCGA GCACCGATGC GCAGGAAGCC
GGCTGGATCG TCGAGGAGAT CCGCTCGCTG ATCAACACCG GAATGTCGCG CAGCGAAGTC
GCCGTCCTGT ATCGCAGCAA CGCGCAATCG CGCGCGATCG AGCACACGCT GATGACCTCG
GGCATTCCGT ATCGCGTGTA CGGCGGCCTG CGCTTCTTCG AGCGCCAGGA AGTGAAGCAT
GCGCTCGCGT ACCTGCGCCT GATCGACAAC CCGAACGACG ACACCGCGTT CGTGCGCGTC
GTGAACTTCC CGACGCGCGG GATCGGCGCG CGCTCCATCG AGCAGCTCGC GGATGCCGCG
CGCCTGTACG ACTGTTCGAT GGCCGCCGCG ATTCCGTACG TGACCGGCAA GGCCGGCACG
AGCCTCGGCG GGTTCGCGAC GCTGATCGCG AAGATGCGCG CCGAGACGCA GCAGATGAGC
CTGCCCGAGA CGGTCGAGTA CGTCGTGCGC GCGAGCGGCC TCGCCGATTT CTACCAGGGC
GAGCGCGAAG GCCAGGACCG CCTCGAGAAC TTGCAGGAAC TCGTGAACGC GGCCACCGCG
TTCGTCAGCG AGGAAGGCTA CGGGCTCGAC GCGCCGGCCC GCTCGATCCC GCTGCGCGCG
GGGGCGATCG CGGCGCCGGA GCTCGGCGTG GATGCGAACG ATCCGTCGGT CGACGTGCTC
GATCCGGCGC CGCTCGACGA CCCCGCGCAG AACCCCGACA CGATGACGCC GCTCGCGGGC
TTCCTGTCGC ACGCATCGCT CGAAGCCGGC GACAACCAGG CGCAGGCCGG CCAGGACGCC
GTGCAGCTGA TGACGGTGCA CGCGGCGAAG GGCCTCGAAT TCTCGGCCGT GTTCATCACC
GGCCTGGAGG AAGGGCTGTT CCCGCACGAG AACAGCGTGC TCGAATCGGA CGGCCTCGAG
GAAGAGCGCC GGCTGATGTA CGTCGCGATC ACGCGGGCGA AGGAGCGGCT CTACCTGTCG
TTCGCGCAGA GCCGGATGCT GCACGGCCAG ACGCGCTACA ACGTGCGCTC GCGCTTCTTC
GACGAATTGC CGGAGCACGT GCTGAAGTGG CTGACGCCGA AGGTCGAGGC GGGCGCGCGT
TGGGGCGGCC GTTCGGACAA TGCCGGCTGG GGGCGCGACT GGTTCTCGCG GCCGGGCGGC
GGCAGTCGCG AGCAGGTCGT CGACGCGGCG GTTTCCGCGC CGCTGCCGGC GTTCGCGAAC
AAGCAGCGCG CGGCCGACAC CGGCTTTCGC GTCGGCCAGC AGGTATTTCA TACCAAGTTC
GGCGAGGGCA CGGTCACCGC GCTCGAAGGC AACGGCGCCG ATGCGAAGGC GCAGGTGAAG
TTCAAGCGGC ACGGCGAGAA GTGGCTCGCG CTGGCGGTCG CGAAACTGCA GGCGGTGGAA
TGA
|
|---|
| Protein sequence | MDAHRPAIAG SAPARRAALT APRRREAERI GNGIAPPTYN VGSAFFSHAR CRSMPDLLAN
LNPEQYAAVT LPNEPALILA GAGSGKTRVL ITRIAWLIQQ GYASPPTVLA VTFTNKAARE
MMARLSAMMP IDTRGMWIGT FHGLCNRMLR THWRDAGLPQ TFQILDTADQ LSAIKRLMKA
ANVDDEKYPP KNVQYFINNA KEQGLRPDKV DATDNFNRKF VELYQAYDQQ CQREGVVDFP
ELLLRCYELL AYNAPLRAHY QARFRHILVD EFQDTNKLQY AWLKMLAGGE NAIFAVGDDD
QSIYAFRGAN VGNMRDFEDE FRVRNLIKLE QNYRSHGNIL DAANQLISNN AHRLGKNLRT
DAGHGEPVRV YEASTDAQEA GWIVEEIRSL INTGMSRSEV AVLYRSNAQS RAIEHTLMTS
GIPYRVYGGL RFFERQEVKH ALAYLRLIDN PNDDTAFVRV VNFPTRGIGA RSIEQLADAA
RLYDCSMAAA IPYVTGKAGT SLGGFATLIA KMRAETQQMS LPETVEYVVR ASGLADFYQG
EREGQDRLEN LQELVNAATA FVSEEGYGLD APARSIPLRA GAIAAPELGV DANDPSVDVL
DPAPLDDPAQ NPDTMTPLAG FLSHASLEAG DNQAQAGQDA VQLMTVHAAK GLEFSAVFIT
GLEEGLFPHE NSVLESDGLE EERRLMYVAI TRAKERLYLS FAQSRMLHGQ TRYNVRSRFF
DELPEHVLKW LTPKVEAGAR WGGRSDNAGW GRDWFSRPGG GSREQVVDAA VSAPLPAFAN
KQRAADTGFR VGQQVFHTKF GEGTVTALEG NGADAKAQVK FKRHGEKWLA LAVAKLQAVE
|
|---|
| |