| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1273 |
|---|
| Symbol | |
|---|
| ID | 4311671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1393026 |
|---|
| End bp | 1394918 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638149082 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_773165 |
|---|
| Protein GI | 115351326 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAA CCGATACCCA ACCGGATCTG ATCCTGCACA ACGGGCGCAT CACGACGCTC
GATCGTGCGA ACCCCGTCGC CACCGCGGTG GCGATCAAGG ACGGCCGCTT CGTCGCGGTC
GGCAGCAACG CGGACGTGAT GCCGCTCGCG GGCCGCGCAA CGAAGGTCGT CGACCTCGAC
GGCCGCGCGG TGCTGCCGGG CCTGACCGAC AACCATACGC ACGTGATTCG CGGCGGCCTG
AACTACAACA TGGAGCTGCG CTGGGACGGC GTGCGCTCGC TCGCCGTCGC GATGGAGATG
CTGCGGCAGC AGGTCGCGAT CACGCCCGCG CCGCAATGGG TGCGCGTGGT CGGCGGCTTC
ACCGAACATC AGTTTGCCGA GAAGCGCCTG CCGACGATCG ACGAGCTCAA TGCGGCCGCG
CCCGATACGC CGGTGTTCAT CCTGCACCTG TACGATCGCG CGCTGCTGAA CGCGGCCGCG
CTGCGCGTCG TCGGCTATAC GAAGGACACG CCGGAGCCGC CGGGCGGCAC GATCCTGCGC
GACGCCGCGG GCAACCCGAC GGGCCTGCTG CTCGCGAACC CGAACGCGAC GATCCTCTAC
GCGACGCTCG CGAAGGGTCC GAAGCTGCCG TTCGAGTACC AGTACAACTC GACGCGCCAC
TTCATGCGCG AGCTGAACCG GCTCGGCGTG ACGGGCGTGA TCGACGCGGG CGGCGGCTCG
CAGAACTACC CCGACGATTA CGAAGTGATC CGCCAGCTGC ACGACGCGGG CGAGATGACG
ATCCGCATCG CGTACAACCT GTTCACGCAG AAGCCGAACG CGGAGAAGGA AGACTTCGTG
AACTGGACGA AGAGCGTCAA GTATCACGAC GGCACCGACT ACTTCCGCCA CAACGGCGCG
GGCGAGATGC TGGTGTTTTC CGCGGCCGAC TTCGAGGACT TCCGCGTCGC GCGTCCGGAT
CTGCCCGCGC AGATGGAGGA CGATCTCGAA GGCGTCGTGC GCGTGCTCGC GCAGAACCGC
TGGCCGTGGC GCATGCATGC GACCTACGAC GAAACGATCA GCCGCGCGCT CGACGTGTTC
GAGAAGGTCA ACGAGGACAT CCCGCTCGAA GGGCTGAACT GGTTCTTCGA TCACGCGGAA
ACGATCTCCG AGCGATCGAT GGACCGGATC GCGGCGCTCG GCGGCGGCAT CGCGGTGCAG
CACCGGATGG CGTATCAGGG CGAGTATTTC GTCGAGCGTT ATGGCGCGCA GGCGGCCGAG
GCGACGCCGC CGGTCGCGAA GATGCTGTCC AAGGGCATCA AGGTGTCGGC CGGCACGGAC
GCGACGCGGG TGGCGTCGTA CAACCCGTGG GTGTCGCTCG CGTGGCTCGT GACGGGCAAG
ACGGTCGGCG GCACGCGCCT GTATCCGCAG CGCAACCTGC TCGATCGCGA AACCGCGCTG
CGCATGTGGA CCGAGTACGT GACGTGGTTC TCGAACGAAG TGGGCAAGAA GGGCCGCATC
GCGGTCGGGC AGTTGGCAGA CCTGATGGTC CCCGACCGCG ATTTCTTCAC GTGCGCGGAG
GACGATATCG CCGACACGAC CGCGTTGCTG ACGGTGGTCG GCGGGCGGAT CGTGTGGGGT
GCCGGGCCGT TCGCGTCGCA CGATATGCCG ATTCCGCCGG CGATGCCGGA CTGGTCGCCG
GTGCGCGCGT ACGGCGGCTA TGGCGGCTGG GGCGCGACGC AGCGCGAGGG CGCGCCGCTG
CAGCGCGCAG CAGCGGCCGC TGCCGCGTGC GGTTGTTCGA CCGCGTGCGG GATGCACGGC
CACGCACATG CGAACGCATG GGGCCGCACG TTGCCGACGT CGGACGCGAA GGGCTTCTGG
GGCGCGTTCG GCTGTTCGTG CTGGGCGGTC TGA
|
|---|
| Protein sequence | MSATDTQPDL ILHNGRITTL DRANPVATAV AIKDGRFVAV GSNADVMPLA GRATKVVDLD
GRAVLPGLTD NHTHVIRGGL NYNMELRWDG VRSLAVAMEM LRQQVAITPA PQWVRVVGGF
TEHQFAEKRL PTIDELNAAA PDTPVFILHL YDRALLNAAA LRVVGYTKDT PEPPGGTILR
DAAGNPTGLL LANPNATILY ATLAKGPKLP FEYQYNSTRH FMRELNRLGV TGVIDAGGGS
QNYPDDYEVI RQLHDAGEMT IRIAYNLFTQ KPNAEKEDFV NWTKSVKYHD GTDYFRHNGA
GEMLVFSAAD FEDFRVARPD LPAQMEDDLE GVVRVLAQNR WPWRMHATYD ETISRALDVF
EKVNEDIPLE GLNWFFDHAE TISERSMDRI AALGGGIAVQ HRMAYQGEYF VERYGAQAAE
ATPPVAKMLS KGIKVSAGTD ATRVASYNPW VSLAWLVTGK TVGGTRLYPQ RNLLDRETAL
RMWTEYVTWF SNEVGKKGRI AVGQLADLMV PDRDFFTCAE DDIADTTALL TVVGGRIVWG
AGPFASHDMP IPPAMPDWSP VRAYGGYGGW GATQREGAPL QRAAAAAAAC GCSTACGMHG
HAHANAWGRT LPTSDAKGFW GAFGCSCWAV
|
|---|
| |