Gene Bamb_1270 details

Gene Information

• Locus tag: Bamb_1270
• ID: 4311668
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 1391048
• End bp: 1391734
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 638149079
• Product: isochorismatase hydrolase
• Protein accession: YP_773162
• Protein GI: 115351323
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.530133
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAATC CGAAACTTGA AGTACTCACC CCGCAGAACA GCCAGCTGAT CTTCATCGAC 
CAGCAGCCGC AGATGGCGTT CGGCGTGCAG TCGATCGATC GCCAGGTGCT GAAGAACAAC 
GTCGTGGGCC TGGCGAAGGC CGCGAAGGTC TTCAACATCC CGACCACGAT CACGACGGTC 
GAAAGCGACA GCTTCTCGGG CCACACCTAT CCCGAGCTGC TCGACGTGTT CCCGAACCAG 
AAGACGCTCG AACGCACGTC GATGAACTCG TGGGACGACC AGAAGGTGCG TGACGCACTG 
GCCGCGAACG GCCGCAAGAA GGTGGTCGTG TCGGGCCTGT GGACCGAAGT CTGCAACACG 
ACGTTCGCGC TGTGCGCGAT GCTCGAGGGC GACTACGAGA TCTACATGGT CGCCGACGCA 
TCGGGTGGCA CGTCGCAGGC CGCGCACGAC ATCGCGATGC AGCGCATGGT GCAGGCCGGC 
GTGGTTCCCG TTACGTGGCA GCAGGTGCTG CTCGAATGGC AACGCGACTG GGCACGCCGC 
GACAGCTACG ACGCGGTGAT GGCGATCGCG AAGGAGCATT CGGGCGCGTA CGGGATGGGC 
GTCGACTACG CGTACACGAT GGTCCACAAG GCGCCGCAAC GCACCGCGAC GCCGCACGAG 
TCGATTCCGC CGGTTCCGGC GAAGTAA 

 

Protein sequence

MSNPKLEVLT PQNSQLIFID QQPQMAFGVQ SIDRQVLKNN VVGLAKAAKV FNIPTTITTV 
ESDSFSGHTY PELLDVFPNQ KTLERTSMNS WDDQKVRDAL AANGRKKVVV SGLWTEVCNT 
TFALCAMLEG DYEIYMVADA SGGTSQAAHD IAMQRMVQAG VVPVTWQQVL LEWQRDWARR 
DSYDAVMAIA KEHSGAYGMG VDYAYTMVHK APQRTATPHE SIPPVPAK