Gene Bamb_1190 details

Gene Information

• Locus tag: Bamb_1190
• ID: 4311195
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: -
• Start bp: 1302205
• End bp: 1304085
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 638148997
• Product: hypothetical protein
• Protein accession: YP_773082
• Protein GI: 115351243
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACCATC TGCTGTCACA TTACGAACGC GAAGTTGGGA TACTGGTCCG TCATCTGGCG 
CAATTCTCCC GGCGCTTTCC CAAGATCGCG GCTCGCCTCG GCATTGCCGG CGCTCACGTC 
GAGGACCTGC ATGTCGATCG AATGATGCAG ACATTCGCAC TGCTGGCTGC ACGCATCGAT 
GCGAAACTCG ACGACGACTA TCCGCAATTC ACCGAAGCCC TTCTCGAAGT GGCCTATCCG 
CAGTACCTGC GCACCATTCC ATCATGCGCG CTCGCCTCGT TCGATCCGTC GAACATGTTT 
GGCCAGCTGA CCGAACCAAT CACCATTGCA CGCGGCACGA TGCTTGACGC CAACGCGGCA 
CCCTGTCGAT TTCGAACCGT ATACGACGTG GCGTTGTCAC CATTGCGCGT TCATTCGGCG 
CGTTATTCGC CTGCTACGCT CGCGCCCGCA TCCGCACGCA TTCCCGCAGA AGTCACTGGC 
ATCATTTCGA TTAGCTTTGC GAGCGAGGCG GCATCCCAGC TCTTCGACGA CGCAACCCCG 
TCCGGCCCTA TTCGCATACA TCTGGCTGGA GACAGACCGT TGGTCGTTGC ACTGACCGAT 
GCACTGCTGC TTCGGGCGTC GAGTGCGTAT GTGGAAGTTG ACGACAGCGG GCGCTGGATC 
AGCTTGTCGA AAGTCCCCGT CGAGGCAGTA GGCTTTGGCA ACGACGAGCA TCTGTTGCCC 
GACGAAAAAC CGACCAGCTC ACGGTCTTTC CAGAGCCTGA TGGAGTATTT CGCCTATCCG 
GAAAAATTCG ATTTCGTCGA CGTCGATCTG GGTCGAATCC GCCGCGGTGC ACGCGCCCCC 
GAAGCGCAGC GCCTAACGCT CCACGTTGCT GTGCAAGGTA CGCCCAGCGA TTCTGTCGCT 
GCTCAGATCC TGACAACGCT ACGCACAAGC GCATTCCGGC TGTTCTGTAC ACCCGTCGTC 
AATCTGTTCG AACGCGCGGC AATCCCGATC CAGCTAACCA GCAGTGATGC GGCCTATCCC 
ATCGTCCCGC TTCCGTTGGC GACTGGGGTC CCGCTCAGCG TCTATTCGAT CACAGGCGTG 
TATCTGGGTG ATCGAACGGA ATCAGAGAAG GACAAGGTGC CTGCTGTCGA GCGCCCGACC 
TCCAGAACTC GAGTATTGCC GTTTCGCGCG TTTAGTCACA CTCAGTCCCC GGAGGCCTCC 
ACCGTGTACT GGGTCGCCGG CCGAGATCCG GAAGCTGCGC CAAGCGCTGC ACTTACAACA 
CCACTACTGA CGTTGCTGAA TTTAAACGGT CATCCTGCGA ATCCGCAACA TCCACAGGTC 
GACGTTGACG TGCTAGCAAC AAACGGAGAG TTGCCATCGC GCTTGCAAAT CGGCGCGCCA 
GATAGCGATC TTCTGTACGA AGGCTCAGCG CTTGCATGCC CCATTACCCT TCTTTCACGA 
CCAACCTTGC CGGCATCCCT GCCGCGTGGA CACGGAGCTT TATGGCGCGT CCTGTCGACC 
TTGGCACCTC ACCCGCTCGA TTTGACGCGA TCCGGATTGC CGGCCTTGAA GGACTTTCTC 
CGACAGCATG CCCCGCGTTC CAGCGTGGTT GCTCAACGTT GCATCGACGC CATCGTATCC 
CTCGACTACA AGCCGGCGAT CAGGTGGATG TCTCTCGACA ACCAGTTCCC GTCATTTGTT 
CGCGGCGTGG AAATCCTGCT TTCATTCTCG GAGGCCACGA CAAGAGACAT CAGCCTGTAT 
CGGTTCTCGT TGATCATGGG CCAGTTCTTC GGCCCATACG CCCATTCAAA CAGCTACGTT 
CAACTGGTCG TGTTGTCGGC CGAGAGCGGC AAAGAGCTTT TGCGATGCAC GCCGCGCGCT 
GGAACGCAAC CACTGGTCTA G 

 

Protein sequence

MDHLLSHYER EVGILVRHLA QFSRRFPKIA ARLGIAGAHV EDLHVDRMMQ TFALLAARID 
AKLDDDYPQF TEALLEVAYP QYLRTIPSCA LASFDPSNMF GQLTEPITIA RGTMLDANAA 
PCRFRTVYDV ALSPLRVHSA RYSPATLAPA SARIPAEVTG IISISFASEA ASQLFDDATP 
SGPIRIHLAG DRPLVVALTD ALLLRASSAY VEVDDSGRWI SLSKVPVEAV GFGNDEHLLP 
DEKPTSSRSF QSLMEYFAYP EKFDFVDVDL GRIRRGARAP EAQRLTLHVA VQGTPSDSVA 
AQILTTLRTS AFRLFCTPVV NLFERAAIPI QLTSSDAAYP IVPLPLATGV PLSVYSITGV 
YLGDRTESEK DKVPAVERPT SRTRVLPFRA FSHTQSPEAS TVYWVAGRDP EAAPSAALTT 
PLLTLLNLNG HPANPQHPQV DVDVLATNGE LPSRLQIGAP DSDLLYEGSA LACPITLLSR 
PTLPASLPRG HGALWRVLST LAPHPLDLTR SGLPALKDFL RQHAPRSSVV AQRCIDAIVS 
LDYKPAIRWM SLDNQFPSFV RGVEILLSFS EATTRDISLY RFSLIMGQFF GPYAHSNSYV 
QLVVLSAESG KELLRCTPRA GTQPLV