| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1156 |
|---|
| Symbol | |
|---|
| ID | 4308770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 1264441 |
|---|
| End bp | 1265664 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638148963 |
|---|
| Product | polyhydroxyalkanoate depolymerase, intracellular |
|---|
| Protein accession | YP_773048 |
|---|
| Protein GI | 115351209 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.871299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTACG CCGTCGTCGA GCAGCAGCGG GAATGGATGC GCGCGTGGCG CGAAGCGACG
CGTCACGCGT TCGACGTGTG GCCCGCCGAG ACGCTGCCGC ACGCCGCGTC GTCGTGTTAT
GACGACCTGT TCGAGCCGCT GCTCGGGCCG GCCGTGGGGC CGCCGCGCTT CGAGATCCGG
CGGCCGGCCG TCGACGAGCG GATCGTCGCG CACACGCCGT TCTGCCAGTT GAGGCGCTTC
GCGCGCGACG ACACCCGACG CACGATGCTG CTGTGCGCGC CGCTCGCCGG TCACGCGGCC
GTGGTGATGC GGGAGACCGT CGAGGCGCTG CTCGCGGACG GCGACGTGTG CGTGACCGAC
TGGGTCAATG CGCGCGACGT GCCGCTCGCG GCCGGCCGCT TCGGGCTCGA CGAATACGTG
GCGACGCTCG ACGGCTTCGT CGACGCGCTC GCCCGCGACG CCCGGCCGCT GCATGTCGTC
GCCGTGTGCC AGGCCACCGT GCCCGCGCTC GGCGCGCTCG CGCTGCGCGC CGCGCGCGGC
CTCGCGCCGC CCGCGAGCGT CACGCTGATC GGCGGGCCGC TCGACGCGCG CATCAACCCG
AGCTCACTCG GCACGACCGC CGCGTCGCGT TCGCTCACGT GGTGCCGCCG CCATCTGATC
GACATCGTGC CGCCCTGCTT CCCCGGCCGC GGCCGGCATG TGTTCCCGAC CTATCTCCAG
CAAGGCGAAA TCGCGCTGCT GTATCCGCAA CGCTTGCTGA CGCTGATCGA GGAGTACGCG
CGCGCCGCGT CGCGCTTCGA CCTGACGGCG CTGGCGGACG CGCGGCGCGC GCTGCGCGAG
TACACGGCGC TGCTCGACAT GCCGGCCGAA TACTTCCTCG ATACCGTCGA TGTCGTGTTC
CAGCGAATGT GTTTGCCGAA CGGCACGTGG GACGTCGGCG GCCGGCGCGT CGAGCCGGCC
GCGCTGCGCG GCGTTTTGCT GCTGACGGTG GAAGGCCGTT GCGACGCCGT CACCGGCGCC
GGCCAGACGC ATGCGGCACT CGACATGTGC GGCGGCCTAG CGGCCGGCGA GCGCCATCGT
GTCGATATCG ACGATTGCGA TCACTACGGG CTGTTCACGG GCGACCGCTG GCGCGGCGAC
GTTCATCCGG CGCTGCAGCG GGTGTTCGCG CAGGCGGAAG CCGCTCGCCC GGCAGCGCGC
CGGCGCCGGG TCAGACGGAC GTGA
|
|---|
| Protein sequence | MWYAVVEQQR EWMRAWREAT RHAFDVWPAE TLPHAASSCY DDLFEPLLGP AVGPPRFEIR
RPAVDERIVA HTPFCQLRRF ARDDTRRTML LCAPLAGHAA VVMRETVEAL LADGDVCVTD
WVNARDVPLA AGRFGLDEYV ATLDGFVDAL ARDARPLHVV AVCQATVPAL GALALRAARG
LAPPASVTLI GGPLDARINP SSLGTTAASR SLTWCRRHLI DIVPPCFPGR GRHVFPTYLQ
QGEIALLYPQ RLLTLIEEYA RAASRFDLTA LADARRALRE YTALLDMPAE YFLDTVDVVF
QRMCLPNGTW DVGGRRVEPA ALRGVLLLTV EGRCDAVTGA GQTHAALDMC GGLAAGERHR
VDIDDCDHYG LFTGDRWRGD VHPALQRVFA QAEAARPAAR RRRVRRT
|
|---|
| |