| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1129 |
|---|
| Symbol | |
|---|
| ID | 4308743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 1238265 |
|---|
| End bp | 1239695 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638148936 |
|---|
| Product | permease for cytosine/purines, uracil, thiamine, allantoin |
|---|
| Protein accession | YP_773021 |
|---|
| Protein GI | 115351182 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCAACGA ATCCCAGTGG AAAAGCCGGC GGCCTGATCG AGGTACGCTC GATCGATTTC
ATTCCCGACG CCGAACGCCA CGGCGGGCTG CTGAGCCAGT TCACGCTGTG GCTGTCGGCG
AACATGCAGA TCACGGCCAT CGTCACGGGG GCGCTCGCGG TCGTGCTCGG CGGCGACGTG
TTCTGGTCGC TGGTCGCGCT GCTGCTCGGC CAGTTCGTCG GCGGCGCGGT GATGGCGCTG
CACGGCGCGC AGGGGCCGCA GCTCGGGTTG CCGCAGATGA TCTCGAGCCG CGTGCAGTTC
GGCGTCTACG GCGCGATGAT CCCGATCGTG CTCGTGTGCC TGATGTACAT CGGCTTTTCC
GCCAGCGGCT CGGTGCTGGC CGGGCAGGCG GTCGCGCAAC TGCTGCACGT CGACGACGCG
GCCGGCATCC TGCTGTTCGC GGCCGTGATC GTCGTGCTGA CGGTGTTCGG CTATCGCGCG
ATCCACTTCG TCGGCCGGAT CGCGAGCGTG GTCGGCATCG TCGCGTTCGT CTACATGTTC
ACGCAGCTGT TCGCGAACCA CGACGTCGGT GCGCTGCTCG CGAACCGGCA CTTCTCGCTC
GCGAGCTTCC TGCTGTCAAT GTCGCTGTCC GCATCGTGGC AGATCGCGTT CGGCCCGTAC
GTCGCCGACT ATTCGCGCTA CCTGCCGCGC TCGACGTCGT CGGTCGCTAC GTTCCTCGCG
GTCGGCCTGG GCTCGGTGAT CGGCGCGCAG GCCGCGATGG TGTTCGGCGT GTTCGCGGCC
GCGCTGGCCG GCAGCCAGTT CGCGCACCAC GAGGTGTCGT ACATCGTCGG GCTCGGCTCG
ACGGGGGCCG TCGCCGCACT GCTGTACTTG AGCATCGCGT TCGGCAAGGT AACGGTGACC
GCGCTCAACG CGTACGGCAG CTTCATGTCG ATGGCGACGA TCGTCAGTGG TTTCCGCGGC
AAGGGCGCGG TGTCGTCGAA GAGCCGTCTC GTCTACATCT TCGGGATGAT CTGCGTGTCG
ACGCTGATCG CGCTGGCCGG CCGTCATTCG TTCCTGAAGG AATTCACCGC GTTCATCCTG
TTCCTGCTCG CGTTCTTCAC GCCGTGGAGC GCGATCAACC TGGTCGACTA CTACTGCTTC
ACGCGCTCGC GCTATGACGT ACCGGCGCTG TCCGACCCGG ATGGCCGCTA CGGCCGCTGG
AACGTGATGG CGATCACGAT CTACGTGGTC GGCATCCTGG TGCAGGTGCC GTTCATGTCG
ACGCACATCT ACACGGGCGC GCTCGTCGAT GCGCTCGGCG GCACCGACAT CTCGTGGATC
CTCGGCCTCA TCGTGCCGGC CGTGCTGTAC TACGTCGGCG CGCGTGCGTC GCGACGCAGC
ATCCCCGAGC GGCTGATCCT GCCGCTCGAA CGCGGCGAGG TTCACCACTG A
|
|---|
| Protein sequence | MSTNPSGKAG GLIEVRSIDF IPDAERHGGL LSQFTLWLSA NMQITAIVTG ALAVVLGGDV
FWSLVALLLG QFVGGAVMAL HGAQGPQLGL PQMISSRVQF GVYGAMIPIV LVCLMYIGFS
ASGSVLAGQA VAQLLHVDDA AGILLFAAVI VVLTVFGYRA IHFVGRIASV VGIVAFVYMF
TQLFANHDVG ALLANRHFSL ASFLLSMSLS ASWQIAFGPY VADYSRYLPR STSSVATFLA
VGLGSVIGAQ AAMVFGVFAA ALAGSQFAHH EVSYIVGLGS TGAVAALLYL SIAFGKVTVT
ALNAYGSFMS MATIVSGFRG KGAVSSKSRL VYIFGMICVS TLIALAGRHS FLKEFTAFIL
FLLAFFTPWS AINLVDYYCF TRSRYDVPAL SDPDGRYGRW NVMAITIYVV GILVQVPFMS
THIYTGALVD ALGGTDISWI LGLIVPAVLY YVGARASRRS IPERLILPLE RGEVHH
|
|---|
| |