| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1096 |
|---|
| Symbol | |
|---|
| ID | 4309671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 1197295 |
|---|
| End bp | 1199586 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638148904 |
|---|
| Product | protein of unknown function DUF893, YccS/YhfK |
|---|
| Protein accession | YP_772989 |
|---|
| Protein GI | 115351150 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTATT CGGTCGAAAT CAGAAAGTTT CTCTACAGCC AGTACTTTTT CGGCGGCCTG
CGGATCGCGG TCGGCGTGTC GCTGCCGGCC GTGCTGTGCC TGATCGTGTT TCACAACCGC
GAGCTCGGCT TCACGATCTC GACGGGCGCG CTCGGCGCGT GCGTCGTCGA CATGCCGGGC
CCGCTGAAGT ACAAGCACAA CGAAATGCTC GCGTGCAGCG TGATCGGCTT CCTGGCCGCG
CTCGCGACGG GCCTCGCCAC GCCGAACATC TTCGGGCTGT GGCTGACGAT CGTGCCGCTC
ACGTTCGTGC TGTCGCTGAT CGTCGTCTAC GGCAACCGCT GGCCGCAGAT CAGCTTCGCG
ACGCTGTTCA TGATGGTGAT GACGCTCGAG GAGAAGTTCA CGCCGCTGCA GGCGTTCGTC
AACGCGGGCT GGATTCTCGC GGGCGGCCTC TGGTACACGT ACTGGGCGAC GCTCGTGTCG
CAATGGCAGG CGCGCCGGAT CGAACAGCAG GCGCTTGCCG AAAGCCTGTT CGCCTGCGCC
GACTACCTGC TCGCGCGCGC GCAGTTCTAC GATCTCGACG CCGATCTCGA CGAGTGCTAC
CGCAACCTCG TCGCGAAGCA GATCACCGCG GTCGAAACGC AGGAAACCGC GCGCGACATC
GTGCTGCGCA ATCTGCCGAA GCTGCGTCGC GGCAAGCTCG ATCCCGGCCG CGCGACGATG
TACAACCTGT TCATCAACAG CGTCGACCTG CACGAGCTGT TCGTCGGTGC GCACACCGAC
TATCCGCTCG TGCGCAACAC GTTCGGCGGC TCGGACCTGA TCATTTTCTA CCGCGACCTG
ATCCGCAAGG CAGCCGCCGA TCTCGAGCAG ATCGGCCTCG CGGTGCTCGA AAACCGCGCG
CCGCATTCGC GAATCAGCGT GAAGGCCGAA CTGCGCGCGA TCGAGTACGA GATCGAGCTG
ATGCGCAAGA AGAATTTCCC GGCCAGCAAT GCGGAAGCGT ACGCGGCGGT GCTCGCGACG
TTCCGGCGCA TCTGGAGCGC GACGCGCCTG ATCGACCGGA TGCGCCGCAA CCTGTCGGGC
CATGCCGACC CGCAGCAGAT GGAGCTGAAG ATCGACAAGG CGCTCACGCG CTTCCTGCAG
CGGCGCCGGA TGTCGCCGCT GCTGATCTTC TCGAACCTGA ACATGCGCTC GCCGAGCTTT
CGCCACGCGC TGCGCGTGAC GATCGCGGTG GCGGTCGGCT TCTGGCTCGG CCGGCTGCTG
CCGCTCACGA ACGCATACTG GATCGTGATG ACGACCATCA TCATCCTGAA GCCCGGCTAC
TCGCTCACCA AGCAGCGCAA TGCGCAGCGT ATCGTCGGCA CGCTGATCGG CTGCGCGGCG
AGCATCGCGC TGATCTACAC GGTGAAGGAG CCGCACCTGC TGATCGCGAT CATGTTCGGC
TCGATGGTGA TGAGCTACAG CCTGCTGCTG TTCAACTACG CGGCGAGCGT CGTGTTCACG
TCGTCGTACG TGCTGCTGAT GTTCCACCTG CTCGCGCCGG GCAGCATGCG GATCATCGGC
GAGCGCGCGA TCGACACCGT GGTCGGCTGC ATGATCGCGA TCGCCGCGAG CCGCCTGTTC
CCGTACTGGG AATACCGGCT GATGGGCAAG CTCGTCACCG ACATGCTGAC GTCGACCCGC
AAGTATTTCG AGGCCGTGTG GCGTGCCGGA CGCGGGGCAT CGCCGCCGCC CGTGCCGACC
GCCGACGGCG CGGCGGTCGT GCCGGTGGTC GCCGCGGCGA TCGAAGCGCC CACCACCGCC
CTCGACGACG ACTACCGCTA CCGCCTCGCG CGCAAGGACG TGCACATCGC GTTCGCGAAC
CTCGGCCAGG CGTTCCAGCG GATGATGATC GAGCCGAAGG CGCACCAGCG CTTCGTGCCG
GAGCTGAACG ACCTGCTCGT GCAGACGCAC GTGCTCGGCG CGCAGATCAC CGCCGCCGCG
CCGCTGATCC GCAGCGCGTG CGCGGCCGAC GAGACCCTCG TCCACGACGA CGCGCTACAC
CGCGGCCTGT CCGCCGTGCT GGAGAACCTC GAGAAGGCGG AAGCCGGCGA GCCGCCGCCG
GCCGACCAGC TCGATGCGAC CAAGCAGATC ACGCGCGAGC TCGACGCGAT GGTCGTATCC
GCGGAAAAAT CCGACGCGGT GGGCGCCGAG CTCACGCACG ACCTGAAGGT GCTTGCGCAC
CAATGCAAGC AGATGCTCGC GTCGTCGTTG CTGATCCGCA AGGACGCGAG CGTGATCCGC
CTGCCCGCAT GA
|
|---|
| Protein sequence | MRYSVEIRKF LYSQYFFGGL RIAVGVSLPA VLCLIVFHNR ELGFTISTGA LGACVVDMPG
PLKYKHNEML ACSVIGFLAA LATGLATPNI FGLWLTIVPL TFVLSLIVVY GNRWPQISFA
TLFMMVMTLE EKFTPLQAFV NAGWILAGGL WYTYWATLVS QWQARRIEQQ ALAESLFACA
DYLLARAQFY DLDADLDECY RNLVAKQITA VETQETARDI VLRNLPKLRR GKLDPGRATM
YNLFINSVDL HELFVGAHTD YPLVRNTFGG SDLIIFYRDL IRKAAADLEQ IGLAVLENRA
PHSRISVKAE LRAIEYEIEL MRKKNFPASN AEAYAAVLAT FRRIWSATRL IDRMRRNLSG
HADPQQMELK IDKALTRFLQ RRRMSPLLIF SNLNMRSPSF RHALRVTIAV AVGFWLGRLL
PLTNAYWIVM TTIIILKPGY SLTKQRNAQR IVGTLIGCAA SIALIYTVKE PHLLIAIMFG
SMVMSYSLLL FNYAASVVFT SSYVLLMFHL LAPGSMRIIG ERAIDTVVGC MIAIAASRLF
PYWEYRLMGK LVTDMLTSTR KYFEAVWRAG RGASPPPVPT ADGAAVVPVV AAAIEAPTTA
LDDDYRYRLA RKDVHIAFAN LGQAFQRMMI EPKAHQRFVP ELNDLLVQTH VLGAQITAAA
PLIRSACAAD ETLVHDDALH RGLSAVLENL EKAEAGEPPP ADQLDATKQI TRELDAMVVS
AEKSDAVGAE LTHDLKVLAH QCKQMLASSL LIRKDASVIR LPA
|
|---|
| |