| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1078 |
|---|
| Symbol | |
|---|
| ID | 4311137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 1172893 |
|---|
| End bp | 1176201 |
|---|
| Gene Length | 3309 bp |
|---|
| Protein Length | 1102 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638148886 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_772971 |
|---|
| Protein GI | 115351132 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.955454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGT CGCGCCCCTT CATCACCCGC CCCGTCGCGA CGACGCTGCT CGCGCTCGGC
GTCGCGCTCG CCGGCCTGTT CGCGTTCATC AAGCTGCCGG TGTCGCCGCT GCCGCAGGTC
GACTTCCCGA CCATCTCGGT GCAGGCGTCG CTGCCCGGCG CGAGCCCCGA GACCGTCGCG
ACCAGCGTGA CGAGCCCGCT CGAGCGGCAC CTGGGCTCGA TCGCCGACGT CAGCGAGATG
ACGTCGACCA GCACGGTCGG CAACGCGCGG ATCATCCTGC AGTTCGGGCT GAACCGCGAC
ATCGACGGCG CCGCGCGCGA CGTGCAGGCC GCGATCAACG CGGCGCGCGC CGACCTGCCC
GCCTCGCTGA AGAGCAACCC GACGTACCGC AAGGTCAACC CGGCCGACTC GCCGATCATG
ATCGTGTCGC TGACGTCGGA GACTTCGTCG CCCGCGAAGC TGTACGACGC CGCGTCGACG
GTGCTGCAGC AGTCGCTGTC GCAGATCGAC GGGATCGGCC AGGTGTCGGT GAGCGGTTCC
GCGAATCCGG CCGTGCGCGT CGAGCTCGAA CCGCATGCGC TGTTCCACTA CGGAATCGGC
CTCGAGGACG TGCGGGCCGC GCTCGCGTCC GCGAACGCGA ACAGCCCGAA GGGCGCGATC
GAATTCGGCC CGAAGCACTA CCAGCTCTAT ACGAACGACC AGGCGTCGCA TGCGTCGCAG
TACAGCGACC TGGTCGTCGC GTACCGCAAC GGCGCGGCCG TGCGGCTGTC CGACCTGTCC
GAGGTCGTCG ACTCGGTCGA GGACCTGCGC AACCTCGGCC TGTCGAACGG CAAGCGCGCG
GTGCTCGTGA TCCTCTACCG CTCGCCCGGC GCGAACATCA TCGAGACGAT CGATCGCGTG
CGCACGGCGC TGCCGCAGCT CACCGCGTCG CTGCCGGCCG ACATCACGGT GACGCCGGTG
CTCGACCGTT CGACGACGAT CCGCGCGTCG CTGAAGGACA CCGAGCACAC GCTGCTGATC
GCGATCAGCC TGGTCGTGAT GGTCGTGTTC CTGTTTCTGC GCAACTGGCG CGCGACGCTG
ATTCCGAGCG TCGCGGTGCC GATCTCGATC ATCGGCACGT TCGGCGCGAT GTACCTGCTC
GGCTTCTCGA TCGACAATCT GTCGCTGATG GCGCTGATCG TCGCGACCGG CTTCGTGGTC
GACGATGCGA TCGTCGTGCT CGAGAACATC ACGCGTCACA TCGAGAACGG CAAGCCGCGG
CTGCAGGCCG CGTTCGACGG CGCGCGCGAG GTCGGCTTCA CGGTGCTGTC GATGAGCATC
TCGCTCGTCG CGGTGTTCCT GCCGATCCTG CTGATGGGCG GCATCGTCGG GCGCCTGTTC
CGCGAATTCG CGCTGACGCT GTCGCTCGCG ATCGCGGTAT CGCTCGCGGT GTCGCTGACG
GTCACGCCGA TGATGTGCGC GCGGCTGCTG CGCGAGCCGC ACGACGCGCA CGAGGAAGGC
CGCCTCGGCC GGTTCCTGGA GCGGTTCTTC ACGCGGATGC AGCGCGGCTA CGAGCGCTCG
CTGTCGTGGG CGCTGCGCCG CCCGCTGCTG GTCCTGCTGA TCCTGTTCGC GACGATCGGG
CTGAATGTCT ATCTGTACAT CATCGTGCCG AAGGGCTTCT TTCCGCAGCA GGACACCGGG
CTGATGATCG GCGGCATTCG GGCCGACCAG TCCACGTCGT TCCAGGCGAT GAAGCAGAAG
TTCACCGAGA TGATGCGGAT CGTGCAGAGC AACCCGAACG TGCAGAGCGC CGCGGGCTTT
ACCGGCGGCA CGCAGACCAA TTCGGGCTTC ATGTTCGTCA CGCTGAAGGA TCGCACCGAG
CGCAAGCTGT CGGCCGACCA GGTGATCCAG CAACTGCGCA GGCCGCTGGC GGATGTCGCC
GGCGCGAGCA CGTTCCTGCA GGCGGCGCAG GACATCCGCG TCGGCGGCCG GCAGAGCAAC
GCGCAATACC AGTTCACGCT GCTCGGCGAT TCGAGCGCCG ACCTGTACAA GTGGGGGCCG
CTGCTGACCG AGGCGCTGCA GAAGCGCTCA GAGCTGACCG ACGTCAACTC CGACCAGCAG
CAAGGCGGCC TCGAGGCGAT GGTGACGATC GACCGCGCGA CCGCCGCGCG GCTCGGCATC
AAGCCCGCGC AGATCGACAA CACGCTGTAC GACGCGTTCG GCCAGCGCCA GGTCTCGACG
ATCTACAACC CGCTGAACCA GTACCACGTC GTGATGGAAG TCGCGCCGAA ATACTGGCAG
AGCCCGCAAA TGCTGAACGA AGTGTGGATC AGCACGTCGG GCGGCAGCGC GAACGGCTCG
CAGTCGACCA ACGCGGCGGC CGGCACCTTC GTCGCGACCT CGGCCGGCAC GTCGAGCGCC
GGCACGGCCG CCACCAGCGC CGCGGCGATC GCGTCCGATT CCGCGCGCAA CCAAGCGTTG
AACTCGATCG CGTCGAGCGG CAAGTCGAGT GCGTCGTCGG GCGCGGCGGT GTCGACGTCG
AAGTCGACGA TGATCCCGCT GTCCGCGATC GCGACCTTCG GCCCGAGCAC GACGCCGTTG
TCGGTCAACC ACCAGGGCCT CTTCGTCGCG ACGACGATCT CGTTCAACCT GCCGCCGGGC
GTGTCGCTGT CGCAGGCGAC CCAGGTGATC TACCAGACGA TGGCGCAGAT CGGCGTGCCG
CCGACGATCG TCGGCAGCTT CCAGGGCACC GCGCAGGCGT TCCAGCAATC GCTGAACAAC
CAGCCGATCC TGATCCTCGC GGCGCTGCTG GCCGTCTACA TCGTGCTCGG GATCCTGTAC
GAGAGCTACA TCCACCCGAT CACGATCCTG TCGACGCTGC CGTCGGCCGG CGTGGGCGCG
CTGCTCGCGC TGCTGCTGTT CAAGACGGAA TTCAGCATCA TCGCGCTGAT CGGCGTGATC
CTGCTGATCG GCATTGTGAA GAAGAACGCG ATCATGATGG TCGATTTCGC GATCGACCAG
ACGCGCAACG GCAACAAGTC GTCGTACGAT GCGATCCACG AGGCGTGCCT GCTGCGCTTC
CGGCCGATCA TGATGACGAC GATGGCGGCG CTCCTCGGCG CGCTGCCGCT CGCGTTCGGC
CACGGCGACG GCGCCGAGCT GCGCGCGCCG CTCGGGATCG CGATCGCCGG CGGCCTGATC
ATGTCGCAGG TGCTGACGCT CTATACGACG CCGGTCGTCT ATCTGTACAT GGACCGGCTG
CGCGTGTGGG GCGAGAAGCG CCGCAACCGC CGCGGCAATT CGGGCGGGCC GGCGGTGGCT
GGGGAGTAG
|
|---|
| Protein sequence | MNLSRPFITR PVATTLLALG VALAGLFAFI KLPVSPLPQV DFPTISVQAS LPGASPETVA
TSVTSPLERH LGSIADVSEM TSTSTVGNAR IILQFGLNRD IDGAARDVQA AINAARADLP
ASLKSNPTYR KVNPADSPIM IVSLTSETSS PAKLYDAAST VLQQSLSQID GIGQVSVSGS
ANPAVRVELE PHALFHYGIG LEDVRAALAS ANANSPKGAI EFGPKHYQLY TNDQASHASQ
YSDLVVAYRN GAAVRLSDLS EVVDSVEDLR NLGLSNGKRA VLVILYRSPG ANIIETIDRV
RTALPQLTAS LPADITVTPV LDRSTTIRAS LKDTEHTLLI AISLVVMVVF LFLRNWRATL
IPSVAVPISI IGTFGAMYLL GFSIDNLSLM ALIVATGFVV DDAIVVLENI TRHIENGKPR
LQAAFDGARE VGFTVLSMSI SLVAVFLPIL LMGGIVGRLF REFALTLSLA IAVSLAVSLT
VTPMMCARLL REPHDAHEEG RLGRFLERFF TRMQRGYERS LSWALRRPLL VLLILFATIG
LNVYLYIIVP KGFFPQQDTG LMIGGIRADQ STSFQAMKQK FTEMMRIVQS NPNVQSAAGF
TGGTQTNSGF MFVTLKDRTE RKLSADQVIQ QLRRPLADVA GASTFLQAAQ DIRVGGRQSN
AQYQFTLLGD SSADLYKWGP LLTEALQKRS ELTDVNSDQQ QGGLEAMVTI DRATAARLGI
KPAQIDNTLY DAFGQRQVST IYNPLNQYHV VMEVAPKYWQ SPQMLNEVWI STSGGSANGS
QSTNAAAGTF VATSAGTSSA GTAATSAAAI ASDSARNQAL NSIASSGKSS ASSGAAVSTS
KSTMIPLSAI ATFGPSTTPL SVNHQGLFVA TTISFNLPPG VSLSQATQVI YQTMAQIGVP
PTIVGSFQGT AQAFQQSLNN QPILILAALL AVYIVLGILY ESYIHPITIL STLPSAGVGA
LLALLLFKTE FSIIALIGVI LLIGIVKKNA IMMVDFAIDQ TRNGNKSSYD AIHEACLLRF
RPIMMTTMAA LLGALPLAFG HGDGAELRAP LGIAIAGGLI MSQVLTLYTT PVVYLYMDRL
RVWGEKRRNR RGNSGGPAVA GE
|
|---|
| |