| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1006 |
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| Symbol | |
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| ID | 4310941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1093955 |
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| End bp | 1095454 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638148810 |
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| Product | protease Do |
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| Protein accession | YP_772899 |
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| Protein GI | 115351060 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.836835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAAC TCACGCTGCG CAACGTGTTC GCGGCGGCGG TGCTGTGTGC CTGCCTGCCC
CTCATCCCGC ATACCGCGGT GGCGGCCACG CCGCCCGCCG CCAGCCTTCC CGACTTCGCC
GATCTGGTCG AAAAGGTCGG GCCGGCCGTC GTGAACATCC GGACTACCGC GAACGTGCCG
ATTCCCGGCC CGCGCGGTGC GCTCCCGCCG GGCTTCGACA ACGGCGACAT GTCGGAATTC
TTCCGGCGCT TCTTCGGCAT TCCGCTGCCG CAGGCGCCCG GCAACGGTGG CGGCAACGGC
AATCCGAAGA ACGCGCCGGC GCCGGACAAT CCGCCCGACG CCGAGCAGAA CCGCGGCGTC
GGTTCGGGCT TCATCGTGTC GGCGGACGGT TACGTGATGA CGAACGCGCA CGTCGTCGAC
GATGCGGACA CCATCTACGT GACGCTGACC GACAAGCGCG AATTCAAGGC GAAGCTGATC
GGCGTCGACG ACCGCACGGA CGTCGCGGTG GTCAAGATCC AGGCGTCGAA CCTGCCGGTC
GTCGCGATCG GCGATTCGAA CAAGGTGCGC GTCGGCGAGT GGGTCGTCGC GATCGGTTCG
CCGTTCGGCC TCGACAACAC CGTGACGGCC GGCATCGTGA GCTCGAAGAG CCGCAACACG
GGCGACTACC TGCCGTTCAT CCAGACCGAC GTCGCGGTGA ACCCCGGCAA CTCGGGCGGC
CCGCTGATCA ACATGCAGGG CGAGGTGATC GGCATCAACT CGCAGATCTA CAGCCGCACC
GGCGGTTTCA TGGGCATTTC GTTCGCGATC CCGATCGACG AGGCGATGCG CGTGGCCGAC
CAGCTGAAGG CGACCGGCAA GGTCACGCGC GGCCGCATCG CGGTGGCGAT CGGCGAGGTG
ACGAAGGACG TGGCCGATTC GATCGGGCTG CCGAAGGCGG AGGGCGCGCT CGTCAGCAGC
GTCGAGCCGG GCGGTCCGGC CGACAAGGCG GGCATCCAGC CGGGCGACAT CATCCTGAAG
TTCAACGGCC GGCCGGTCGA GACGGCGTCG GATCTGCCGC GCATGGTCGG CGACACGAAA
CCGGGCACGA AGGCGACCGT CAGCGTATGG CGCAAGGGTC AGGCGCGCGA TCTGCCGATC
ACGATCGCCG AGACGCCGGC AGAGACCACG GCGAAGGCCG AGCAGCGCAA GAACACGCCG
CAGAAGCCGC GCCAGGCAAA TTCGCTTGGC TTGACGGTCA GCGACATTCC GGCGGATCAG
ATGAAATCGC TGAAGCTGAA GAACGGCGTG CAGATCGACG CCGTCGACGG CCCGGCCGCC
CGTGCGGGCC TGCAGCGCGG CGACATCGTG CTGCGCGTCG GCGACACCGA CATCACGAGC
GCGAAGCAGT TCGCGGAAGT GACCGCGCAG CTGGATTCGC AGAAGGCGGT CGCGGTGCTC
GTGCGGCGCG GCGACAACAC GCAGTTCGTG CCGGTGCGCC CGCGCCCGAC GCAGAAGTAA
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| Protein sequence | MTKLTLRNVF AAAVLCACLP LIPHTAVAAT PPAASLPDFA DLVEKVGPAV VNIRTTANVP
IPGPRGALPP GFDNGDMSEF FRRFFGIPLP QAPGNGGGNG NPKNAPAPDN PPDAEQNRGV
GSGFIVSADG YVMTNAHVVD DADTIYVTLT DKREFKAKLI GVDDRTDVAV VKIQASNLPV
VAIGDSNKVR VGEWVVAIGS PFGLDNTVTA GIVSSKSRNT GDYLPFIQTD VAVNPGNSGG
PLINMQGEVI GINSQIYSRT GGFMGISFAI PIDEAMRVAD QLKATGKVTR GRIAVAIGEV
TKDVADSIGL PKAEGALVSS VEPGGPADKA GIQPGDIILK FNGRPVETAS DLPRMVGDTK
PGTKATVSVW RKGQARDLPI TIAETPAETT AKAEQRKNTP QKPRQANSLG LTVSDIPADQ
MKSLKLKNGV QIDAVDGPAA RAGLQRGDIV LRVGDTDITS AKQFAEVTAQ LDSQKAVAVL
VRRGDNTQFV PVRPRPTQK
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