Gene Bamb_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1006 
Symbol 
ID4310941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1093955 
End bp1095454 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content68% 
IMG OID638148810 
Productprotease Do 
Protein accessionYP_772899 
Protein GI115351060 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.836835 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGAAAC TCACGCTGCG CAACGTGTTC GCGGCGGCGG TGCTGTGTGC CTGCCTGCCC 
CTCATCCCGC ATACCGCGGT GGCGGCCACG CCGCCCGCCG CCAGCCTTCC CGACTTCGCC
GATCTGGTCG AAAAGGTCGG GCCGGCCGTC GTGAACATCC GGACTACCGC GAACGTGCCG
ATTCCCGGCC CGCGCGGTGC GCTCCCGCCG GGCTTCGACA ACGGCGACAT GTCGGAATTC
TTCCGGCGCT TCTTCGGCAT TCCGCTGCCG CAGGCGCCCG GCAACGGTGG CGGCAACGGC
AATCCGAAGA ACGCGCCGGC GCCGGACAAT CCGCCCGACG CCGAGCAGAA CCGCGGCGTC
GGTTCGGGCT TCATCGTGTC GGCGGACGGT TACGTGATGA CGAACGCGCA CGTCGTCGAC
GATGCGGACA CCATCTACGT GACGCTGACC GACAAGCGCG AATTCAAGGC GAAGCTGATC
GGCGTCGACG ACCGCACGGA CGTCGCGGTG GTCAAGATCC AGGCGTCGAA CCTGCCGGTC
GTCGCGATCG GCGATTCGAA CAAGGTGCGC GTCGGCGAGT GGGTCGTCGC GATCGGTTCG
CCGTTCGGCC TCGACAACAC CGTGACGGCC GGCATCGTGA GCTCGAAGAG CCGCAACACG
GGCGACTACC TGCCGTTCAT CCAGACCGAC GTCGCGGTGA ACCCCGGCAA CTCGGGCGGC
CCGCTGATCA ACATGCAGGG CGAGGTGATC GGCATCAACT CGCAGATCTA CAGCCGCACC
GGCGGTTTCA TGGGCATTTC GTTCGCGATC CCGATCGACG AGGCGATGCG CGTGGCCGAC
CAGCTGAAGG CGACCGGCAA GGTCACGCGC GGCCGCATCG CGGTGGCGAT CGGCGAGGTG
ACGAAGGACG TGGCCGATTC GATCGGGCTG CCGAAGGCGG AGGGCGCGCT CGTCAGCAGC
GTCGAGCCGG GCGGTCCGGC CGACAAGGCG GGCATCCAGC CGGGCGACAT CATCCTGAAG
TTCAACGGCC GGCCGGTCGA GACGGCGTCG GATCTGCCGC GCATGGTCGG CGACACGAAA
CCGGGCACGA AGGCGACCGT CAGCGTATGG CGCAAGGGTC AGGCGCGCGA TCTGCCGATC
ACGATCGCCG AGACGCCGGC AGAGACCACG GCGAAGGCCG AGCAGCGCAA GAACACGCCG
CAGAAGCCGC GCCAGGCAAA TTCGCTTGGC TTGACGGTCA GCGACATTCC GGCGGATCAG
ATGAAATCGC TGAAGCTGAA GAACGGCGTG CAGATCGACG CCGTCGACGG CCCGGCCGCC
CGTGCGGGCC TGCAGCGCGG CGACATCGTG CTGCGCGTCG GCGACACCGA CATCACGAGC
GCGAAGCAGT TCGCGGAAGT GACCGCGCAG CTGGATTCGC AGAAGGCGGT CGCGGTGCTC
GTGCGGCGCG GCGACAACAC GCAGTTCGTG CCGGTGCGCC CGCGCCCGAC GCAGAAGTAA
 
Protein sequence
MTKLTLRNVF AAAVLCACLP LIPHTAVAAT PPAASLPDFA DLVEKVGPAV VNIRTTANVP 
IPGPRGALPP GFDNGDMSEF FRRFFGIPLP QAPGNGGGNG NPKNAPAPDN PPDAEQNRGV
GSGFIVSADG YVMTNAHVVD DADTIYVTLT DKREFKAKLI GVDDRTDVAV VKIQASNLPV
VAIGDSNKVR VGEWVVAIGS PFGLDNTVTA GIVSSKSRNT GDYLPFIQTD VAVNPGNSGG
PLINMQGEVI GINSQIYSRT GGFMGISFAI PIDEAMRVAD QLKATGKVTR GRIAVAIGEV
TKDVADSIGL PKAEGALVSS VEPGGPADKA GIQPGDIILK FNGRPVETAS DLPRMVGDTK
PGTKATVSVW RKGQARDLPI TIAETPAETT AKAEQRKNTP QKPRQANSLG LTVSDIPADQ
MKSLKLKNGV QIDAVDGPAA RAGLQRGDIV LRVGDTDITS AKQFAEVTAQ LDSQKAVAVL
VRRGDNTQFV PVRPRPTQK