Gene Bamb_1004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1004 
Symbol 
ID4310939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand+ 
Start bp1092251 
End bp1092880 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content70% 
IMG OID638148808 
Productanti sigma-E protein, RseA 
Protein accessionYP_772897 
Protein GI115351058 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.59721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGAGCA TCATGGGGTC GGTCAATAAG CAGTCGCAAG CGTACTCGCG CGGCGAGCGT 
CTTTCCGCTC TGGTCGACGG TGAGCTGTTC GACGGCCCGG ATCACGGGCA GTTTCTGGCT 
GAGCTCGATC GTGCGGATCG CGCGACGTGG GCCCACTACC ACCTGATCGG CGATGCGCTG 
CGCTCGGACG AGCTCGCGCT GTCGCCCGCG CTGAGCGTCG CGTTCACCGC GCGCATGTCC 
GCCGCGCTCG AAAGCGAGCC GCACCTGCTC GCACCGGCCG CCGCGCCGGT CGCGCGCAAG 
CTGCTGTCGC TGCGCCGCCG TGTCGTGCCC GCTTTCGCGG TGGCCGCCGC GGCCGCCACG 
CTCACGTGGA TCGTCGTTCC GCAACTGCAG ACGGCCGGTG CGCCCGGCGC CGTCCAGGTC 
GCGTCGGCAG GCGCGCCGCA GAGCGGCAAC CTGCAGCGCG TGACGGTTGC ACAGGCATCG 
GCGCAGCAGG GCCTGCAGGA CGTCAACATC ATCCGCGACG CAAGTCTCGA CCAATACCTT 
GAAGCGCACC AGCAATTCGC GCAGCAGCCC GTCGTCACAG GCTCGATGCC GCTGATCCGC 
GCTGCCGTGA CCACCACGCC AGGCCAATAA
 
Protein sequence
MGSIMGSVNK QSQAYSRGER LSALVDGELF DGPDHGQFLA ELDRADRATW AHYHLIGDAL 
RSDELALSPA LSVAFTARMS AALESEPHLL APAAAPVARK LLSLRRRVVP AFAVAAAAAT 
LTWIVVPQLQ TAGAPGAVQV ASAGAPQSGN LQRVTVAQAS AQQGLQDVNI IRDASLDQYL 
EAHQQFAQQP VVTGSMPLIR AAVTTTPGQ